Loop J8_8WHY

3D structure

PDB id: 8WHY (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å

Loop

Sequence: UGUUUAAG*UACAAUC*GCACUA*UUAC*GCGUCA*UCAC*GAUAAG*CGAAAA
Length: 47 nucleotides
Bulged bases: None detected
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8WHY|1|A|U|5
8WHY|1|A|G|6
8WHY|1|A|U|7
8WHY|1|A|U|8
8WHY|1|A|U|9
8WHY|1|A|A|10
8WHY|1|A|A|11
8WHY|1|A|G|12
*
8WHY|1|A|U|612
8WHY|1|A|A|613
8WHY|1|A|C|614
8WHY|1|A|A|615
8WHY|1|A|A|616
8WHY|1|A|U|617
8WHY|1|A|C|618
*
8WHY|1|A|G|2242
8WHY|1|A|C|2243
8WHY|1|A|A|2244
8WHY|1|A|C|2245
8WHY|1|A|U|2246
8WHY|1|A|A|2247
*
8WHY|1|A|U|2264
8WHY|1|A|U|2265
8WHY|1|A|A|2266
8WHY|1|A|C|2267
*
8WHY|1|A|G|2849
8WHY|1|A|C|2850
8WHY|1|A|G|2851
8WHY|1|A|U|2852
8WHY|1|A|C|2853
8WHY|1|A|A|2854
*
8WHY|1|A|U|3012
8WHY|1|A|C|3013
8WHY|1|A|A|3014
8WHY|1|A|C|3015
*
8WHY|1|A|G|3027
8WHY|1|A|A|3028
8WHY|1|A|U|3029
8WHY|1|A|A|3030
8WHY|1|A|A|3031
8WHY|1|A|G|3032
*
8WHY|1|A|C|3110
8WHY|1|A|G|3111
8WHY|1|A|A|3112
8WHY|1|A|A|3113
8WHY|1|A|A|3114
8WHY|1|A|A|3115

Current chains

Chain A: 23S rRNA

Nearby chains

Chain 5: 50S ribosomal protein L32
Chain F: 50S ribosomal protein L3
Chain M: 50S ribosomal protein L13
Chain T: 50S ribosomal protein L20
Chain V: 50S ribosomal protein L22

J8_8WHY_001