Loop J8_8WV1

3D structure

PDB id: 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.99 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length: 47 nucleotides
Bulged bases: 8WV1|1|a|G|555, 8WV1|1|a|C|2043, 8WV1|1|a|A|2803
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8WV1|1|a|A|8
8WV1|1|a|U|9
8WV1|1|a|G|10
8WV1|1|a|G|11
8WV1|1|a|U|12
8WV1|1|a|A|13
8WV1|1|a|A|14
8WV1|1|a|G|15
*
8WV1|1|a|U|550
8WV1|1|a|A|551
8WV1|1|a|C|552
8WV1|1|a|A|553
8WV1|1|a|A|554
8WV1|1|a|G|555
8WV1|1|a|C|556
*
8WV1|1|a|G|2040
8WV1|1|a|A|2041
8WV1|1|a|A|2042
8WV1|1|a|C|2043
8WV1|1|a|U|2044
8WV1|1|a|G|2045
*
8WV1|1|a|C|2062
8WV1|1|a|U|2063
8WV1|1|a|A|2064
8WV1|1|a|C|2065
*
8WV1|1|a|G|2637
8WV1|1|a|C|2638
8WV1|1|a|G|2639
8WV1|1|a|C|2640
8WV1|1|a|A|2641
8WV1|1|a|G|2642
*
8WV1|1|a|C|2801
8WV1|1|a|C|2802
8WV1|1|a|A|2803
8WV1|1|a|C|2804
*
8WV1|1|a|G|2816
8WV1|1|a|G|2817
8WV1|1|a|U|2818
8WV1|1|a|A|2819
8WV1|1|a|A|2820
8WV1|1|a|G|2821
*
8WV1|1|a|C|2899
8WV1|1|a|G|2900
8WV1|1|a|A|2901
8WV1|1|a|G|2902
8WV1|1|a|G|2903
8WV1|1|a|U|2904

Current chains

Chain a: 23S rRNA

Nearby chains

Chain 5: 50S ribosomal protein L32
Chain d: 50S ribosomal protein L3
Chain i: 50S ribosomal protein L13
Chain p: 50S ribosomal protein L20
Chain r: 50S ribosomal protein L22

J8_8WV1_004