Loop J8_9E0P

3D structure

PDB id: 9E0P (explore in PDB, NAKB, or RNA 3D Hub)
Description: M. smegmatis methylated 70S ribosome structure
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å

Loop

Sequence: UGUUUAAG*UACAAUC*GCACUA*UUAC*GCGUCA*UCAC*GAUAAG*CGAAAA
Length: 47 nucleotides
Bulged bases: 9E0P|1|A|U|617, 9E0P|1|A|C|2245
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9E0P|1|A|U|5
9E0P|1|A|G|6
9E0P|1|A|U|7
9E0P|1|A|U|8
9E0P|1|A|U|9
9E0P|1|A|A|10
9E0P|1|A|A|11
9E0P|1|A|G|12
*
9E0P|1|A|U|612
9E0P|1|A|A|613
9E0P|1|A|C|614
9E0P|1|A|A|615
9E0P|1|A|A|616
9E0P|1|A|U|617
9E0P|1|A|C|618
*
9E0P|1|A|G|2242
9E0P|1|A|C|2243
9E0P|1|A|A|2244
9E0P|1|A|C|2245
9E0P|1|A|U|2246
9E0P|1|A|A|2247
*
9E0P|1|A|U|2264
9E0P|1|A|U|2265
9E0P|1|A|A|2266
9E0P|1|A|C|2267
*
9E0P|1|A|G|2849
9E0P|1|A|C|2850
9E0P|1|A|G|2851
9E0P|1|A|U|2852
9E0P|1|A|C|2853
9E0P|1|A|A|2854
*
9E0P|1|A|U|3012
9E0P|1|A|C|3013
9E0P|1|A|A|3014
9E0P|1|A|C|3015
*
9E0P|1|A|G|3027
9E0P|1|A|A|3028
9E0P|1|A|U|3029
9E0P|1|A|A|3030
9E0P|1|A|A|3031
9E0P|1|A|G|3032
*
9E0P|1|A|C|3110
9E0P|1|A|G|3111
9E0P|1|A|A|3112
9E0P|1|A|A|3113
9E0P|1|A|A|3114
9E0P|1|A|A|3115

Current chains

Chain A: 23S rRNA

Nearby chains

Chain 3: Large ribosomal subunit protein bL32
Chain D: Large ribosomal subunit protein uL3
Chain K: Large ribosomal subunit protein uL13
Chain R: Large ribosomal subunit protein bL20
Chain T: Large ribosomal subunit protein uL22

J8_9E0P_001