J8_9KMW_001
3D structure
- PDB id
- 9KMW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.73 Å
Loop
- Sequence
- CCAGGAGUGGAGCCUGCGGCUUAAUUU*GGGAAACCUCACCCG*CCCGGAC*GGGUGGUGGUGCAUGGCCGUUCUUAG*CGAGACUC*GAGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUAC*GGAAUUCCCAGUAA*UGAUUAAG
- Length
- 159 nucleotides
- Bulged bases
- 9KMW|1|2|G|1229, 9KMW|1|2|C|1230, 9KMW|1|2|C|1237, 9KMW|1|2|U|1238, 9KMW|1|2|U|1239, 9KMW|1|2|G|1256, 9KMW|1|2|G|1257, 9KMW|1|2|A|1258, 9KMW|1|2|A|1259, 9KMW|1|2|A|1260, 9KMW|1|2|U|1263, 9KMW|1|2|C|1268, 9KMW|1|2|C|1272, 9KMW|1|2|U|1326, 9KMW|1|2|C|1337, 9KMW|1|2|G|1497, 9KMW|1|2|U|1505, 9KMW|1|2|G|1507, 9KMW|1|2|U|1509, 9KMW|1|2|U|1519, 9KMW|1|2|C|1521, 9KMW|1|2|A|1522, 9KMW|1|2|C|1523, 9KMW|1|2|G|1524, 9KMW|1|2|G|1526
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KMW|1|2|C|1218
9KMW|1|2|C|1219
9KMW|1|2|A|1220
9KMW|1|2|G|1221
9KMW|1|2|G|1222
9KMW|1|2|A|1223
9KMW|1|2|G|1224
9KMW|1|2|U|1225
9KMW|1|2|G|1226
9KMW|1|2|G|1227
9KMW|1|2|A|1228
9KMW|1|2|G|1229
9KMW|1|2|C|1230
9KMW|1|2|C|1231
9KMW|1|2|U|1232
9KMW|1|2|G|1233
9KMW|1|2|C|1234
9KMW|1|2|G|1235
9KMW|1|2|G|1236
9KMW|1|2|C|1237
9KMW|1|2|U|1238
9KMW|1|2|U|1239
9KMW|1|2|A|1240
9KMW|1|2|A|1241
9KMW|1|2|U|1242
9KMW|1|2|U|1243
9KMW|1|2|U|1244
*
9KMW|1|2|G|1255
9KMW|1|2|G|1256
9KMW|1|2|G|1257
9KMW|1|2|A|1258
9KMW|1|2|A|1259
9KMW|1|2|A|1260
9KMW|1|2|C|1261
9KMW|1|2|C|1262
9KMW|1|2|U|1263
9KMW|1|2|C|1264
9KMW|1|2|A|1265
9KMW|1|2|C|1266
9KMW|1|2|C|1267
9KMW|1|2|C|1268
9KMW|1|2|G|1269
*
9KMW|1|2|C|1271
9KMW|1|2|C|1272
9KMW|1|2|C|1273
9KMW|1|2|G|1274
9KMW|1|2|G|1275
9KMW|1|2|A|1276
9KMW|1|2|C|1277
*
9KMW|1|2|G|1320
9KMW|1|2|G|1321
9KMW|1|2|G|1322
9KMW|1|2|U|1323
9KMW|1|2|G|1324
9KMW|1|2|G|1325
9KMW|1|2|U|1326
9KMW|1|2|G|1327
9KMW|1|2|G|1328
9KMW|1|2|U|1329
9KMW|1|2|G|1330
9KMW|1|2|C|1331
9KMW|1|2|A|1332
9KMW|1|2|U|1333
9KMW|1|2|G|1334
9KMW|1|2|G|1335
9KMW|1|2|C|1336
9KMW|1|2|C|1337
9KMW|1|2|G|1338
9KMW|1|2|U|1339
9KMW|1|2|U|1340
9KMW|1|2|C|1341
9KMW|1|2|U|1342
9KMW|1|2|U|1343
9KMW|1|2|A|1344
9KMW|1|2|G|1345
*
9KMW|1|2|C|1384
9KMW|1|2|G|1385
9KMW|1|2|A|1386
9KMW|1|2|G|1387
9KMW|1|2|A|1388
9KMW|1|2|C|1389
9KMW|1|2|U|1390
9KMW|1|2|C|1391
*
9KMW|1|2|G|1479
9KMW|1|2|A|1480
9KMW|1|2|G|1481
9KMW|1|2|C|1482
9KMW|1|2|A|1483
9KMW|1|2|A|1484
9KMW|1|2|U|1485
9KMW|1|2|A|1486
9KMW|1|2|A|1487
9KMW|1|2|C|1488
9KMW|1|2|A|1489
9KMW|1|2|G|1490
9KMW|1|2|G|1491
9KMW|1|2|U|1492
9KMW|1|2|C|1493
9KMW|1|2|U|1494
9KMW|1|2|G|1495
9KMW|1|2|U|1496
9KMW|1|2|G|1497
9KMW|1|2|A|1498
9KMW|1|2|U|1499
9KMW|1|2|G|1500
9KMW|1|2|C|1501
9KMW|1|2|C|1502
9KMW|1|2|C|1503
9KMW|1|2|U|1504
9KMW|1|2|U|1505
9KMW|1|2|A|1506
9KMW|1|2|G|1507
9KMW|1|2|A|1508
9KMW|1|2|U|1509
9KMW|1|2|G|1510
9KMW|1|2|U|1511
9KMW|1|2|C|1512
9KMW|1|2|C|1513
9KMW|1|2|G|1514
9KMW|1|2|G|1515
9KMW|1|2|G|1516
9KMW|1|2|G|1517
9KMW|1|2|C|1518
9KMW|1|2|U|1519
9KMW|1|2|G|1520
9KMW|1|2|C|1521
9KMW|1|2|A|1522
9KMW|1|2|C|1523
9KMW|1|2|G|1524
9KMW|1|2|C|1525
9KMW|1|2|G|1526
9KMW|1|2|C|1527
9KMW|1|2|G|1528
9KMW|1|2|C|1529
9KMW|1|2|U|1530
9KMW|1|2|A|1531
9KMW|1|2|C|1532
*
9KMW|1|2|G|1638
9KMW|1|2|G|1639
9KMW|1|2|A|1640
9KMW|1|2|A|1641
9KMW|1|2|U|1642
9KMW|1|2|U|1643
9KMW|1|2|C|1644
9KMW|1|2|C|1645
9KMW|1|2|C|1646
9KMW|1|2|A|1647
9KMW|1|2|G|1648
9KMW|1|2|U|1649
9KMW|1|2|A|1650
9KMW|1|2|A|1651
*
9KMW|1|2|U|1673
9KMW|1|2|G|1674
9KMW|1|2|A|1675
9KMW|1|2|U|1676
9KMW|1|2|U|1677
9KMW|1|2|A|1678
9KMW|1|2|A|1679
9KMW|1|2|G|1680
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- Small ribosomal subunit protein uS5
- Chain D
- Small ribosomal subunit protein uS3
- Chain F
- Small ribosomal subunit protein uS7
- Chain K
- Small ribosomal subunit protein eS10
- Chain M
- Small ribosomal subunit protein eS12
- Chain P
- Small ribosomal subunit protein uS19
- Chain Q
- Small ribosomal subunit protein uS9
- Chain R
- Small ribosomal subunit protein eS17
- Chain S
- Small ribosomal subunit protein uS13
- Chain T
- Small ribosomal subunit protein eS19
- Chain U
- Small ribosomal subunit protein uS10
- Chain c
- Small ribosomal subunit protein eS28
- Chain d
- Small ribosomal subunit protein uS14
- Chain f
- Small ribosomal subunit protein eS31
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