Loop J9_3JCJ

3D structure

PDB id: 3JCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å

Loop

Sequence: GGCGAUGAAG*CGAAUG*CA*UAU*AGGCGAACC*GAGGAAAAGAAAUC*GAGAUU*AGCAG*CUAAAUAC
Length: 63 nucleotides
Bulged bases: 3JCJ|1|A|U|50, 3JCJ|1|A|A|223
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3JCJ|1|A|G|45
3JCJ|1|A|G|46
3JCJ|1|A|C|47
3JCJ|1|A|G|48
3JCJ|1|A|A|49
3JCJ|1|A|U|50
3JCJ|1|A|G|51
3JCJ|1|A|A|52
3JCJ|1|A|A|53
3JCJ|1|A|G|54
*
3JCJ|1|A|C|116
3JCJ|1|A|G|117
3JCJ|1|A|A|118
3JCJ|1|A|A|119
3JCJ|1|A|U|120
3JCJ|1|A|G|121
*
3JCJ|1|A|C|130
3JCJ|1|A|A|131
*
3JCJ|1|A|U|148
3JCJ|1|A|A|149
3JCJ|1|A|U|150
*
3JCJ|1|A|A|176
3JCJ|1|A|G|177
3JCJ|1|A|G|178
3JCJ|1|A|C|179
3JCJ|1|A|G|180
3JCJ|1|A|A|181
3JCJ|1|A|A|182
3JCJ|1|A|C|183
3JCJ|1|A|C|184
*
3JCJ|1|A|G|212
3JCJ|1|A|A|213
3JCJ|1|A|G|214
3JCJ|1|A|G|215
3JCJ|1|A|A|216
3JCJ|1|A|A|217
3JCJ|1|A|A|218
3JCJ|1|A|A|219
3JCJ|1|A|G|220
3JCJ|1|A|A|221
3JCJ|1|A|A|222
3JCJ|1|A|A|223
3JCJ|1|A|U|224
3JCJ|1|A|C|225
*
3JCJ|1|A|G|230
3JCJ|1|A|A|231
3JCJ|1|A|G|232
3JCJ|1|A|A|233
3JCJ|1|A|U|234
3JCJ|1|A|U|235
*
3JCJ|1|A|A|262
3JCJ|1|A|G|263
3JCJ|1|A|C|264
3JCJ|1|A|A|265
3JCJ|1|A|G|266
*
3JCJ|1|A|C|426
3JCJ|1|A|U|427
3JCJ|1|A|A|428
3JCJ|1|A|A|429
3JCJ|1|A|A|430
3JCJ|1|A|U|431
3JCJ|1|A|A|432
3JCJ|1|A|C|433

Current chains

Chain A: 23S ribosomal RNA

Nearby chains

Chain b: 50S ribosomal protein L34

J9_3JCJ_001