J9_3PIO_002
3D structure
- PDB id
- 3PIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- AUAGUAAG*UACAAGC*GAAUUG*CUAC*GCGCAG*CCAC*GGUAAGACUC*GUUAAG*CAUCAGUCGAGGU
- Length
- 64 nucleotides
- Bulged bases
- 3PIO|1|X|C|537, 3PIO|1|X|G|540, 3PIO|1|X|U|2004, 3PIO|1|X|U|2808, 3PIO|1|X|A|2810
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3PIO|1|X|A|8
3PIO|1|X|U|9
3PIO|1|X|A|10
3PIO|1|X|G|11
3PIO|1|X|U|12
3PIO|1|X|A|13
3PIO|1|X|A|14
3PIO|1|X|G|15
*
3PIO|1|X|U|535
3PIO|1|X|A|536
3PIO|1|X|C|537
3PIO|1|X|A|538
3PIO|1|X|A|539
3PIO|1|X|G|540
3PIO|1|X|C|541
*
3PIO|1|X|G|2001
3PIO|1|X|A|2002
3PIO|1|X|A|2003
3PIO|1|X|U|2004
3PIO|1|X|U|2005
3PIO|1|X|G|2006
*
3PIO|1|X|C|2023
3PIO|1|X|U|2024
3PIO|1|X|A|2025
3PIO|1|X|C|2026
*
3PIO|1|X|G|2604
3PIO|1|X|C|2605
3PIO|1|X|G|2606
3PIO|1|X|C|2607
3PIO|1|X|A|2608
3PIO|1|X|G|2609
*
3PIO|1|X|C|2768
3PIO|1|X|C|2769
3PIO|1|X|A|2770
3PIO|1|X|C|2771
*
3PIO|1|X|G|2781
3PIO|1|X|G|2782
3PIO|1|X|U|2783
3PIO|1|X|A|2784
3PIO|1|X|A|2785
3PIO|1|X|G|2786
3PIO|1|X|A|2787
3PIO|1|X|C|2788
3PIO|1|X|U|2789
3PIO|1|X|C|2790
*
3PIO|1|X|G|2806
3PIO|1|X|U|2807
3PIO|1|X|U|2808
3PIO|1|X|A|2809
3PIO|1|X|A|2810
3PIO|1|X|G|2811
*
3PIO|1|X|C|2857
3PIO|1|X|A|2858
3PIO|1|X|U|2859
3PIO|1|X|C|2860
3PIO|1|X|A|2861
3PIO|1|X|G|2862
3PIO|1|X|U|2863
3PIO|1|X|C|2864
3PIO|1|X|G|2865
3PIO|1|X|A|2866
3PIO|1|X|G|2867
3PIO|1|X|G|2868
3PIO|1|X|U|2869
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain C
- 50S ribosomal protein L4
- Chain G
- 50S ribosomal protein L13
- Chain K
- 50S ribosomal protein L17
- Chain M
- 50S ribosomal protein L19
- Chain N
- 50S ribosomal protein L20
- Chain P
- 50S ribosomal protein L22
- Chain Z
- 50S ribosomal protein L32
Coloring options: