Loop J9_4CXE

3D structure

PDB id: 4CXE (explore in PDB, NAKB, or RNA 3D Hub)
Description: Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.9 Å

Loop

Sequence: GUGGCGACC*GAGGAAAAGAAAC*GGAUU*AAGAG*CUAAAUACCGGCA*UGCGUCGAUGAAG*CGAACG*CG*UAC
Length: 69 nucleotides
Bulged bases: 4CXE|1|2|A|66, 4CXE|1|2|U|328, 4CXE|1|2|C|331, 4CXE|1|3|C|35, 4CXE|1|3|U|38
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4CXE|1|2|G|19
4CXE|1|2|U|20
4CXE|1|2|G|21
4CXE|1|2|G|22
4CXE|1|2|C|23
4CXE|1|2|G|24
4CXE|1|2|A|25
4CXE|1|2|C|26
4CXE|1|2|C|27
*
4CXE|1|2|G|55
4CXE|1|2|A|56
4CXE|1|2|G|57
4CXE|1|2|G|58
4CXE|1|2|A|59
4CXE|1|2|A|60
4CXE|1|2|A|61
4CXE|1|2|A|62
4CXE|1|2|G|63
4CXE|1|2|A|64
4CXE|1|2|A|65
4CXE|1|2|A|66
4CXE|1|2|C|67
*
4CXE|1|2|G|74
4CXE|1|2|G|75
4CXE|1|2|A|76
4CXE|1|2|U|77
4CXE|1|2|U|78
*
4CXE|1|2|A|105
4CXE|1|2|A|106
4CXE|1|2|G|107
4CXE|1|2|A|108
4CXE|1|2|G|109
*
4CXE|1|2|C|323
4CXE|1|2|U|324
4CXE|1|2|A|325
4CXE|1|2|A|326
4CXE|1|2|A|327
4CXE|1|2|U|328
4CXE|1|2|A|329
4CXE|1|2|C|330
4CXE|1|2|C|331
4CXE|1|2|G|332
4CXE|1|2|G|333
4CXE|1|2|C|334
4CXE|1|2|A|335
*
4CXE|1|3|U|30
4CXE|1|3|G|31
4CXE|1|3|C|32
4CXE|1|3|G|33
4CXE|1|3|U|34
4CXE|1|3|C|35
4CXE|1|3|G|36
4CXE|1|3|A|37
4CXE|1|3|U|38
4CXE|1|3|G|39
4CXE|1|3|A|40
4CXE|1|3|A|41
4CXE|1|3|G|42
*
4CXE|1|3|C|101
4CXE|1|3|G|102
4CXE|1|3|A|103
4CXE|1|3|A|104
4CXE|1|3|C|105
4CXE|1|3|G|106
*
4CXE|1|3|C|113
4CXE|1|3|G|114
*
4CXE|1|3|U|136
4CXE|1|3|A|137
4CXE|1|3|C|138

Current chains

Chain 2: 28S RRNA
Chain 3: 5.8S RRNA

Nearby chains

No other chains within 10Å

J9_4CXE_001