J9_4UJC_002
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GUGGCGACC*GAGGAAAAGAAAC*GGAUU*AAGAG*CUAAAUACCGGCA*UGCGUCGAUGAAG*CGAACG*CG*UAC
- Length
- 69 nucleotides
- Bulged bases
- 4UJC|1|A2|A|66, 4UJC|1|A2|U|328, 4UJC|1|A2|C|331, 4UJC|1|A3|C|35, 4UJC|1|A3|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJC|1|A2|G|19
4UJC|1|A2|U|20
4UJC|1|A2|G|21
4UJC|1|A2|G|22
4UJC|1|A2|C|23
4UJC|1|A2|G|24
4UJC|1|A2|A|25
4UJC|1|A2|C|26
4UJC|1|A2|C|27
*
4UJC|1|A2|G|55
4UJC|1|A2|A|56
4UJC|1|A2|G|57
4UJC|1|A2|G|58
4UJC|1|A2|A|59
4UJC|1|A2|A|60
4UJC|1|A2|A|61
4UJC|1|A2|A|62
4UJC|1|A2|G|63
4UJC|1|A2|A|64
4UJC|1|A2|A|65
4UJC|1|A2|A|66
4UJC|1|A2|C|67
*
4UJC|1|A2|G|74
4UJC|1|A2|G|75
4UJC|1|A2|A|76
4UJC|1|A2|U|77
4UJC|1|A2|U|78
*
4UJC|1|A2|A|105
4UJC|1|A2|A|106
4UJC|1|A2|G|107
4UJC|1|A2|A|108
4UJC|1|A2|G|109
*
4UJC|1|A2|C|323
4UJC|1|A2|U|324
4UJC|1|A2|A|325
4UJC|1|A2|A|326
4UJC|1|A2|A|327
4UJC|1|A2|U|328
4UJC|1|A2|A|329
4UJC|1|A2|C|330
4UJC|1|A2|C|331
4UJC|1|A2|G|332
4UJC|1|A2|G|333
4UJC|1|A2|C|334
4UJC|1|A2|A|335
*
4UJC|1|A3|U|30
4UJC|1|A3|G|31
4UJC|1|A3|C|32
4UJC|1|A3|G|33
4UJC|1|A3|U|34
4UJC|1|A3|C|35
4UJC|1|A3|G|36
4UJC|1|A3|A|37
4UJC|1|A3|U|38
4UJC|1|A3|G|39
4UJC|1|A3|A|40
4UJC|1|A3|A|41
4UJC|1|A3|G|42
*
4UJC|1|A3|C|101
4UJC|1|A3|G|102
4UJC|1|A3|A|103
4UJC|1|A3|A|104
4UJC|1|A3|C|105
4UJC|1|A3|G|106
*
4UJC|1|A3|C|113
4UJC|1|A3|G|114
*
4UJC|1|A3|U|136
4UJC|1|A3|A|137
4UJC|1|A3|C|138
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
- Chain A3
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain BL
- 60S RIBOSOMAL PROTEIN L13
- Chain BN
- 60S RIBOSOMAL PROTEIN L15
- Chain BX
- 60S RIBOSOMAL PROTEIN L23A
- Chain Bh
- 60S RIBOSOMAL PROTEIN UL29
- Chain Bi
- 60S RIBOSOMAL PROTEIN L36
- Chain Bj
- 60S RIBOSOMAL PROTEIN L37
- Chain Bl
- 60S RIBOSOMAL PROTEIN L39
Coloring options: