J9_4UJD_001
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- GUGGCGACC*GAGGAAAAGAAAC*GGAUU*AAGAG*CUAAAUACCGGCA*UGCGUCGAUGAAG*CGAACG*CGG*CUAC
- Length
- 71 nucleotides
- Bulged bases
- 4UJD|1|A2|A|66, 4UJD|1|A2|U|328, 4UJD|1|A2|C|331, 4UJD|1|A3|C|35, 4UJD|1|A3|U|38
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJD|1|A2|G|19
4UJD|1|A2|U|20
4UJD|1|A2|G|21
4UJD|1|A2|G|22
4UJD|1|A2|C|23
4UJD|1|A2|G|24
4UJD|1|A2|A|25
4UJD|1|A2|C|26
4UJD|1|A2|C|27
*
4UJD|1|A2|G|55
4UJD|1|A2|A|56
4UJD|1|A2|G|57
4UJD|1|A2|G|58
4UJD|1|A2|A|59
4UJD|1|A2|A|60
4UJD|1|A2|A|61
4UJD|1|A2|A|62
4UJD|1|A2|G|63
4UJD|1|A2|A|64
4UJD|1|A2|A|65
4UJD|1|A2|A|66
4UJD|1|A2|C|67
*
4UJD|1|A2|G|74
4UJD|1|A2|G|75
4UJD|1|A2|A|76
4UJD|1|A2|U|77
4UJD|1|A2|U|78
*
4UJD|1|A2|A|105
4UJD|1|A2|A|106
4UJD|1|A2|G|107
4UJD|1|A2|A|108
4UJD|1|A2|G|109
*
4UJD|1|A2|C|323
4UJD|1|A2|U|324
4UJD|1|A2|A|325
4UJD|1|A2|A|326
4UJD|1|A2|A|327
4UJD|1|A2|U|328
4UJD|1|A2|A|329
4UJD|1|A2|C|330
4UJD|1|A2|C|331
4UJD|1|A2|G|332
4UJD|1|A2|G|333
4UJD|1|A2|C|334
4UJD|1|A2|A|335
*
4UJD|1|A3|U|30
4UJD|1|A3|G|31
4UJD|1|A3|C|32
4UJD|1|A3|G|33
4UJD|1|A3|U|34
4UJD|1|A3|C|35
4UJD|1|A3|G|36
4UJD|1|A3|A|37
4UJD|1|A3|U|38
4UJD|1|A3|G|39
4UJD|1|A3|A|40
4UJD|1|A3|A|41
4UJD|1|A3|G|42
*
4UJD|1|A3|C|101
4UJD|1|A3|G|102
4UJD|1|A3|A|103
4UJD|1|A3|A|104
4UJD|1|A3|C|105
4UJD|1|A3|G|106
*
4UJD|1|A3|C|113
4UJD|1|A3|G|114
4UJD|1|A3|G|115
*
4UJD|1|A3|C|135
4UJD|1|A3|U|136
4UJD|1|A3|A|137
4UJD|1|A3|C|138
Current chains
- Chain A2
- 28S Ribosomal RNA
- Chain A3
- 5.8S Ribosomal RNA
Nearby chains
- Chain AL
- 60S RIBOSOMAL PROTEIN L13
- Chain AN
- 60S RIBOSOMAL PROTEIN L15
- Chain AX
- 60S RIBOSOMAL PROTEIN L23A
- Chain Ah
- 60S RIBOSOMAL PROTEIN L35
- Chain Ai
- 60S RIBOSOMAL PROTEIN L36
- Chain Aj
- 60S RIBOSOMAL PROTEIN L37
- Chain Al
- 60S RIBOSOMAL PROTEIN L39
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