J9_4V4V_001

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGCGAUGAAGGAC*GAUAAGCG*CGAUUUCCGAAUGG*CCCGAU*AGGCGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

78 nucleotides

Bulged bases

4V4V|1|B0|U|50, 4V4V|1|B0|U|72, 4V4V|1|B0|A|74, 4V4V|1|B0|G|141, 4V4V|1|B0|A|223, 4V4V|1|B0|U|431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4V|1|B0|G|45
4V4V|1|B0|G|46
4V4V|1|B0|C|47
4V4V|1|B0|G|48
4V4V|1|B0|A|49
4V4V|1|B0|U|50
4V4V|1|B0|G|51
4V4V|1|B0|A|52
4V4V|1|B0|A|53
4V4V|1|B0|G|54
4V4V|1|B0|G|55
4V4V|1|B0|A|56
4V4V|1|B0|C|57
*
4V4V|1|B0|G|70
4V4V|1|B0|A|71
4V4V|1|B0|U|72
4V4V|1|B0|A|73
4V4V|1|B0|A|74
4V4V|1|B0|G|75
4V4V|1|B0|C|76
4V4V|1|B0|G|77
*
4V4V|1|B0|C|109
4V4V|1|B0|G|110
4V4V|1|B0|A|111
4V4V|1|B0|U|112
4V4V|1|B0|U|113
4V4V|1|B0|U|114
4V4V|1|B0|C|115
4V4V|1|B0|C|116
4V4V|1|B0|G|117
4V4V|1|B0|A|118
4V4V|1|B0|A|119
4V4V|1|B0|U|120
4V4V|1|B0|G|121
4V4V|1|B0|G|122
*
4V4V|1|B0|C|129
4V4V|1|B0|C|130
4V4V|1|B0|C|140
4V4V|1|B0|G|141
4V4V|1|B0|A|149
4V4V|1|B0|U|150
*
4V4V|1|B0|A|176
4V4V|1|B0|G|177
4V4V|1|B0|G|178
4V4V|1|B0|C|179
4V4V|1|B0|G|180
4V4V|1|B0|A|181
4V4V|1|B0|A|182
4V4V|1|B0|C|183
*
4V4V|1|B0|G|214
4V4V|1|B0|G|215
4V4V|1|B0|A|216
4V4V|1|B0|A|217
4V4V|1|B0|A|218
4V4V|1|B0|A|219
4V4V|1|B0|G|220
4V4V|1|B0|A|221
4V4V|1|B0|A|222
4V4V|1|B0|A|223
4V4V|1|B0|U|224
*
4V4V|1|B0|A|231
4V4V|1|B0|G|232
4V4V|1|B0|A|233
4V4V|1|B0|U|234
4V4V|1|B0|U|235
*
4V4V|1|B0|A|262
4V4V|1|B0|G|263
4V4V|1|B0|C|264
4V4V|1|B0|A|265
4V4V|1|B0|G|266
*
4V4V|1|B0|C|426
4V4V|1|B0|U|427
4V4V|1|B0|A|428
4V4V|1|B0|A|429
4V4V|1|B0|A|430
4V4V|1|B0|U|431
4V4V|1|B0|A|432
4V4V|1|B0|C|433

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L4

Chain BR

50S ribosomal protein L23

Chain BW

50S ribosomal protein L29