J9_4V4W_002

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGCGAUGAAGGAC*GAUAAGC*GAUUUCCGAAUGG*CCCGAU*AGGCGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

76 nucleotides

Bulged bases

4V4W|1|B0|U|50, 4V4W|1|B0|U|72, 4V4W|1|B0|A|74, 4V4W|1|B0|G|141, 4V4W|1|B0|A|223, 4V4W|1|B0|U|431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|G|45
4V4W|1|B0|G|46
4V4W|1|B0|C|47
4V4W|1|B0|G|48
4V4W|1|B0|A|49
4V4W|1|B0|U|50
4V4W|1|B0|G|51
4V4W|1|B0|A|52
4V4W|1|B0|A|53
4V4W|1|B0|G|54
4V4W|1|B0|G|55
4V4W|1|B0|A|56
4V4W|1|B0|C|57
*
4V4W|1|B0|G|70
4V4W|1|B0|A|71
4V4W|1|B0|U|72
4V4W|1|B0|A|73
4V4W|1|B0|A|74
4V4W|1|B0|G|75
4V4W|1|B0|C|76
*
4V4W|1|B0|G|110
4V4W|1|B0|A|111
4V4W|1|B0|U|112
4V4W|1|B0|U|113
4V4W|1|B0|U|114
4V4W|1|B0|C|115
4V4W|1|B0|C|116
4V4W|1|B0|G|117
4V4W|1|B0|A|118
4V4W|1|B0|A|119
4V4W|1|B0|U|120
4V4W|1|B0|G|121
4V4W|1|B0|G|122
*
4V4W|1|B0|C|129
4V4W|1|B0|C|130
4V4W|1|B0|C|140
4V4W|1|B0|G|141
4V4W|1|B0|A|149
4V4W|1|B0|U|150
*
4V4W|1|B0|A|176
4V4W|1|B0|G|177
4V4W|1|B0|G|178
4V4W|1|B0|C|179
4V4W|1|B0|G|180
4V4W|1|B0|A|181
4V4W|1|B0|A|182
4V4W|1|B0|C|183
*
4V4W|1|B0|G|214
4V4W|1|B0|G|215
4V4W|1|B0|A|216
4V4W|1|B0|A|217
4V4W|1|B0|A|218
4V4W|1|B0|A|219
4V4W|1|B0|G|220
4V4W|1|B0|A|221
4V4W|1|B0|A|222
4V4W|1|B0|A|223
4V4W|1|B0|U|224
*
4V4W|1|B0|A|231
4V4W|1|B0|G|232
4V4W|1|B0|A|233
4V4W|1|B0|U|234
4V4W|1|B0|U|235
*
4V4W|1|B0|A|262
4V4W|1|B0|G|263
4V4W|1|B0|C|264
4V4W|1|B0|A|265
4V4W|1|B0|G|266
*
4V4W|1|B0|C|426
4V4W|1|B0|U|427
4V4W|1|B0|A|428
4V4W|1|B0|A|429
4V4W|1|B0|A|430
4V4W|1|B0|U|431
4V4W|1|B0|A|432
4V4W|1|B0|C|433

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L23

Chain BW

50S ribosomal protein L29