J9_4V66_001
3D structure
- PDB id
- 4V66 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E. coli ribosome and the tRNAs in Post-accommodation state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- AGCAGUGG*UGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCUGUAG*UUGCAGGGUAUAGACCCGAAAC*GAGAUAGCUGGUUCU*AGCGUUCU*AGAAGUGCGAAUGCUGACAUAAGUAACGAUAAA*UC*GCUUG*CAGUGAAAUUGAACUCGCUGUGAAGAUGCAGUGU
- Length
- 170 nucleotides
- Bulged bases
- 4V66|1|BB|G|530, 4V66|1|BB|G|533, 4V66|1|BB|G|561, 4V66|1|BB|U|566, 4V66|1|BB|U|573, 4V66|1|BB|U|576, 4V66|1|BB|U|580, 4V66|1|BB|G|583, 4V66|1|BB|C|584, 4V66|1|BB|C|587, 4V66|1|BB|U|588, 4V66|1|BB|A|590, 4V66|1|BB|C|595, 4V66|1|BB|U|667, 4V66|1|BB|C|672, 4V66|1|BB|G|805, 4V66|1|BB|U|807, 4V66|1|BB|U|810, 4V66|1|BB|G|1248, 4V66|1|BB|C|1251, 4V66|1|BB|U|1255, 4V66|1|BB|A|1265, 4V66|1|BB|A|1269, 4V66|1|BB|G|1271, 4V66|1|BB|A|1272, 4V66|1|BB|U|1273, 4V66|1|BB|A|1274, 4V66|1|BB|C|1646, 4V66|1|BB|U|1647, 4V66|1|BB|G|2018, 4V66|1|BB|C|2025, 4V66|1|BB|U|2026, 4V66|1|BB|A|2031, 4V66|1|BB|C|2036
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V66|1|BB|A|529
4V66|1|BB|G|530
4V66|1|BB|C|531
4V66|1|BB|A|532
4V66|1|BB|G|533
4V66|1|BB|U|534
4V66|1|BB|G|535
4V66|1|BB|G|536
*
4V66|1|BB|U|558
4V66|1|BB|G|559
4V66|1|BB|C|560
4V66|1|BB|G|561
4V66|1|BB|U|562
4V66|1|BB|A|563
4V66|1|BB|C|564
4V66|1|BB|C|565
4V66|1|BB|U|566
4V66|1|BB|U|567
4V66|1|BB|U|568
4V66|1|BB|U|569
4V66|1|BB|G|570
4V66|1|BB|U|571
4V66|1|BB|A|572
4V66|1|BB|U|573
4V66|1|BB|A|574
4V66|1|BB|A|575
4V66|1|BB|U|576
4V66|1|BB|G|577
4V66|1|BB|G|578
4V66|1|BB|G|579
4V66|1|BB|U|580
4V66|1|BB|C|581
4V66|1|BB|A|582
4V66|1|BB|G|583
4V66|1|BB|C|584
4V66|1|BB|G|585
4V66|1|BB|A|586
4V66|1|BB|C|587
4V66|1|BB|U|588
4V66|1|BB|U|589
4V66|1|BB|A|590
4V66|1|BB|U|591
4V66|1|BB|A|592
4V66|1|BB|U|593
4V66|1|BB|U|594
4V66|1|BB|C|595
4V66|1|BB|U|596
4V66|1|BB|G|597
4V66|1|BB|U|598
4V66|1|BB|A|599
4V66|1|BB|G|600
*
4V66|1|BB|U|657
4V66|1|BB|U|658
4V66|1|BB|G|659
4V66|1|BB|C|660
4V66|1|BB|A|661
4V66|1|BB|G|662
4V66|1|BB|G|663
4V66|1|BB|G|664
4V66|1|BB|U|665
4V66|1|BB|A|666
4V66|1|BB|U|667
4V66|1|BB|A|668
4V66|1|BB|G|669
4V66|1|BB|A|670
4V66|1|BB|C|671
4V66|1|BB|C|672
4V66|1|BB|C|673
4V66|1|BB|G|674
4V66|1|BB|A|675
4V66|1|BB|A|676
4V66|1|BB|A|677
4V66|1|BB|C|678
*
4V66|1|BB|G|799
4V66|1|BB|A|800
4V66|1|BB|G|801
4V66|1|BB|A|802
4V66|1|BB|U|803
4V66|1|BB|A|804
4V66|1|BB|G|805
4V66|1|BB|C|806
4V66|1|BB|U|807
4V66|1|BB|G|808
4V66|1|BB|G|809
4V66|1|BB|U|810
4V66|1|BB|U|811
4V66|1|BB|C|812
4V66|1|BB|U|813
*
4V66|1|BB|A|1194
4V66|1|BB|G|1195
4V66|1|BB|C|1196
4V66|1|BB|G|1197
4V66|1|BB|U|1198
4V66|1|BB|U|1199
4V66|1|BB|C|1200
4V66|1|BB|U|1201
*
4V66|1|BB|A|1244
4V66|1|BB|G|1245
4V66|1|BB|A|1246
4V66|1|BB|A|1247
4V66|1|BB|G|1248
4V66|1|BB|U|1249
4V66|1|BB|G|1250
4V66|1|BB|C|1251
4V66|1|BB|G|1252
4V66|1|BB|A|1253
4V66|1|BB|A|1254
4V66|1|BB|U|1255
4V66|1|BB|G|1256
4V66|1|BB|C|1257
4V66|1|BB|U|1258
4V66|1|BB|G|1259
4V66|1|BB|A|1260
4V66|1|BB|C|1261
4V66|1|BB|A|1262
4V66|1|BB|U|1263
4V66|1|BB|A|1264
4V66|1|BB|A|1265
4V66|1|BB|G|1266
4V66|1|BB|U|1267
4V66|1|BB|A|1268
4V66|1|BB|A|1269
4V66|1|BB|C|1270
4V66|1|BB|G|1271
4V66|1|BB|A|1272
4V66|1|BB|U|1273
4V66|1|BB|A|1274
4V66|1|BB|A|1275
4V66|1|BB|A|1276
*
4V66|1|BB|U|1294
4V66|1|BB|C|1295
*
4V66|1|BB|G|1645
4V66|1|BB|C|1646
4V66|1|BB|U|1647
4V66|1|BB|U|1648
4V66|1|BB|G|1649
*
4V66|1|BB|C|2008
4V66|1|BB|A|2009
4V66|1|BB|G|2010
4V66|1|BB|U|2011
4V66|1|BB|G|2012
4V66|1|BB|A|2013
4V66|1|BB|A|2014
4V66|1|BB|A|2015
4V66|1|BB|U|2016
4V66|1|BB|U|2017
4V66|1|BB|G|2018
4V66|1|BB|A|2019
4V66|1|BB|A|2020
4V66|1|BB|C|2021
4V66|1|BB|U|2022
4V66|1|BB|C|2023
4V66|1|BB|G|2024
4V66|1|BB|C|2025
4V66|1|BB|U|2026
4V66|1|BB|G|2027
4V66|1|BB|U|2028
4V66|1|BB|G|2029
4V66|1|BB|A|2030
4V66|1|BB|A|2031
4V66|1|BB|G|2032
4V66|1|BB|A|2033
4V66|1|BB|U|2034
4V66|1|BB|G|2035
4V66|1|BB|C|2036
4V66|1|BB|A|2037
4V66|1|BB|G|2038
4V66|1|BB|U|2039
4V66|1|BB|G|2040
4V66|1|BB|U|2041
Current chains
- Chain BB
- 23S rRNA
Nearby chains
- Chain B1
- 50S ribosomal protein L4
- Chain B6
- 50S ribosomal protein L13
- Chain BE
- 50S ribosomal protein L15
- Chain BG
- 50S ribosomal protein L17
- Chain BJ
- 50S ribosomal protein L20
- Chain BK
- 50S ribosomal protein L21
- Chain BL
- 50S ribosomal protein L22
- Chain BT
- 50S ribosomal protein L32
- Chain BW
- 50S ribosomal protein L35
- Chain BY
- 50S ribosomal protein L3
Coloring options: