J9_4V7R_003
3D structure
- PDB id
- 4V7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4 Å
Loop
- Sequence
- AGGAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGGCG*CGCAUCGAUGAAG*UGAACG*CG*CAU
- Length
- 66 nucleotides
- Bulged bases
- 4V7R|1|B1|A|67, 4V7R|1|B1|U|326, 4V7R|1|B1|U|329, 4V7R|1|B1|G|330, 4V7R|1|B3|U|34, 4V7R|1|B3|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V7R|1|B1|A|20
4V7R|1|B1|G|21
4V7R|1|B1|G|22
4V7R|1|B1|A|23
4V7R|1|B1|G|24
4V7R|1|B1|U|25
4V7R|1|B1|A|26
4V7R|1|B1|C|27
*
4V7R|1|B1|G|58
4V7R|1|B1|G|59
4V7R|1|B1|A|60
4V7R|1|B1|A|61
4V7R|1|B1|A|62
4V7R|1|B1|A|63
4V7R|1|B1|G|64
4V7R|1|B1|A|65
4V7R|1|B1|A|66
4V7R|1|B1|A|67
4V7R|1|B1|C|68
*
4V7R|1|B1|G|75
4V7R|1|B1|G|76
4V7R|1|B1|A|77
4V7R|1|B1|U|78
4V7R|1|B1|U|79
*
4V7R|1|B1|A|106
4V7R|1|B1|A|107
4V7R|1|B1|A|108
4V7R|1|B1|A|109
4V7R|1|B1|G|110
*
4V7R|1|B1|C|321
4V7R|1|B1|U|322
4V7R|1|B1|A|323
4V7R|1|B1|A|324
4V7R|1|B1|A|325
4V7R|1|B1|U|326
4V7R|1|B1|A|327
4V7R|1|B1|U|328
4V7R|1|B1|U|329
4V7R|1|B1|G|330
4V7R|1|B1|G|331
4V7R|1|B1|C|332
4V7R|1|B1|G|333
*
4V7R|1|B3|C|30
4V7R|1|B3|G|31
4V7R|1|B3|C|32
4V7R|1|B3|A|33
4V7R|1|B3|U|34
4V7R|1|B3|C|35
4V7R|1|B3|G|36
4V7R|1|B3|A|37
4V7R|1|B3|U|38
4V7R|1|B3|G|39
4V7R|1|B3|A|40
4V7R|1|B3|A|41
4V7R|1|B3|G|42
*
4V7R|1|B3|U|102
4V7R|1|B3|G|103
4V7R|1|B3|A|104
4V7R|1|B3|A|105
4V7R|1|B3|C|106
4V7R|1|B3|G|107
*
4V7R|1|B3|C|115
4V7R|1|B3|G|116
*
4V7R|1|B3|C|137
4V7R|1|B3|A|138
4V7R|1|B3|U|139
Current chains
- Chain B1
- 25S ribosomal RNA
- Chain B3
- 5.8S ribosomal RNA
Nearby chains
- Chain BO
- 60S ribosomal protein L15-A
- Chain BW
- 60S ribosomal protein L25
- Chain Bd
- 60S ribosomal protein L37-A
- Chain Bo
- Unassigned secondary structure
- Chain Bq
- Unassigned secondary structure
Coloring options: