J9_4V7R_004

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AGGAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGGCG*CGCAUCGAUGAAG*UGAACG*CG*CAU

Length

66 nucleotides

Bulged bases

4V7R|1|D1|A|67, 4V7R|1|D1|U|326, 4V7R|1|D1|U|329, 4V7R|1|D1|G|330, 4V7R|1|D3|U|34, 4V7R|1|D3|U|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7R|1|D1|A|20
4V7R|1|D1|G|21
4V7R|1|D1|G|22
4V7R|1|D1|A|23
4V7R|1|D1|G|24
4V7R|1|D1|U|25
4V7R|1|D1|A|26
4V7R|1|D1|C|27
*
4V7R|1|D1|G|58
4V7R|1|D1|G|59
4V7R|1|D1|A|60
4V7R|1|D1|A|61
4V7R|1|D1|A|62
4V7R|1|D1|A|63
4V7R|1|D1|G|64
4V7R|1|D1|A|65
4V7R|1|D1|A|66
4V7R|1|D1|A|67
4V7R|1|D1|C|68
*
4V7R|1|D1|G|75
4V7R|1|D1|G|76
4V7R|1|D1|A|77
4V7R|1|D1|U|78
4V7R|1|D1|U|79
*
4V7R|1|D1|A|106
4V7R|1|D1|A|107
4V7R|1|D1|A|108
4V7R|1|D1|A|109
4V7R|1|D1|G|110
*
4V7R|1|D1|C|321
4V7R|1|D1|U|322
4V7R|1|D1|A|323
4V7R|1|D1|A|324
4V7R|1|D1|A|325
4V7R|1|D1|U|326
4V7R|1|D1|A|327
4V7R|1|D1|U|328
4V7R|1|D1|U|329
4V7R|1|D1|G|330
4V7R|1|D1|G|331
4V7R|1|D1|C|332
4V7R|1|D1|G|333
*
4V7R|1|D3|C|30
4V7R|1|D3|G|31
4V7R|1|D3|C|32
4V7R|1|D3|A|33
4V7R|1|D3|U|34
4V7R|1|D3|C|35
4V7R|1|D3|G|36
4V7R|1|D3|A|37
4V7R|1|D3|U|38
4V7R|1|D3|G|39
4V7R|1|D3|A|40
4V7R|1|D3|A|41
4V7R|1|D3|G|42
*
4V7R|1|D3|U|102
4V7R|1|D3|G|103
4V7R|1|D3|A|104
4V7R|1|D3|A|105
4V7R|1|D3|C|106
4V7R|1|D3|G|107
*
4V7R|1|D3|C|115
4V7R|1|D3|G|116
*
4V7R|1|D3|C|137
4V7R|1|D3|A|138
4V7R|1|D3|U|139

Current chains

Chain D1

25S ribosomal RNA

Chain D3

5.8S ribosomal RNA

Nearby chains

Chain DO

60S ribosomal protein L15-A

Chain DW

60S ribosomal protein L25

Chain Dd

60S ribosomal protein L37-A