J9_5GAK_001
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- UAGGAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGGCGA*UCGCAUCGAUGAAG*UGAACG*CG*CAUG
- Length
- 70 nucleotides
- Bulged bases
- 5GAK|1|1|A|67, 5GAK|1|1|U|329, 5GAK|1|4|U|34, 5GAK|1|4|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5GAK|1|1|U|19
5GAK|1|1|A|20
5GAK|1|1|G|21
5GAK|1|1|G|22
5GAK|1|1|A|23
5GAK|1|1|G|24
5GAK|1|1|U|25
5GAK|1|1|A|26
5GAK|1|1|C|27
*
5GAK|1|1|G|58
5GAK|1|1|G|59
5GAK|1|1|A|60
5GAK|1|1|A|61
5GAK|1|1|A|62
5GAK|1|1|A|63
5GAK|1|1|G|64
5GAK|1|1|A|65
5GAK|1|1|A|66
5GAK|1|1|A|67
5GAK|1|1|C|68
*
5GAK|1|1|G|75
5GAK|1|1|G|76
5GAK|1|1|A|77
5GAK|1|1|U|78
5GAK|1|1|U|79
*
5GAK|1|1|A|106
5GAK|1|1|A|107
5GAK|1|1|A|108
5GAK|1|1|A|109
5GAK|1|1|G|110
*
5GAK|1|1|C|321
5GAK|1|1|U|322
5GAK|1|1|A|323
5GAK|1|1|A|324
5GAK|1|1|A|325
5GAK|1|1|U|326
5GAK|1|1|A|327
5GAK|1|1|U|328
5GAK|1|1|U|329
5GAK|1|1|G|330
5GAK|1|1|G|331
5GAK|1|1|C|332
5GAK|1|1|G|333
5GAK|1|1|A|334
*
5GAK|1|4|U|29
5GAK|1|4|C|30
5GAK|1|4|G|31
5GAK|1|4|C|32
5GAK|1|4|A|33
5GAK|1|4|U|34
5GAK|1|4|C|35
5GAK|1|4|G|36
5GAK|1|4|A|37
5GAK|1|4|U|38
5GAK|1|4|G|39
5GAK|1|4|A|40
5GAK|1|4|A|41
5GAK|1|4|G|42
*
5GAK|1|4|U|102
5GAK|1|4|G|103
5GAK|1|4|A|104
5GAK|1|4|A|105
5GAK|1|4|C|106
5GAK|1|4|G|107
*
5GAK|1|4|C|115
5GAK|1|4|G|116
*
5GAK|1|4|C|137
5GAK|1|4|A|138
5GAK|1|4|U|139
5GAK|1|4|G|140
Current chains
- Chain 1
- 25S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L4-A
- Chain N
- 60S ribosomal protein L13-A
- Chain P
- 60S ribosomal protein L15-A
- Chain Z
- 60S ribosomal protein L25
- Chain a
- 60S ribosomal protein L26-A
- Chain j
- 60S ribosomal protein L35-A
- Chain k
- 60S ribosomal protein L36-A
- Chain l
- 60S ribosomal protein L37-A
- Chain n
- 60S ribosomal protein L39
Coloring options: