3D structure

PDB id
5JUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
AGGAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGGCG*CGCAUCGAUGAAG*UGAACG*CG*CAU
Length
66 nucleotides
Bulged bases
5JUO|1|B|A|67, 5JUO|1|B|U|329, 5JUO|1|C|U|38
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5JUO|1|B|A|20
5JUO|1|B|G|21
5JUO|1|B|G|22
5JUO|1|B|A|23
5JUO|1|B|G|24
5JUO|1|B|U|25
5JUO|1|B|A|26
5JUO|1|B|C|27
*
5JUO|1|B|G|58
5JUO|1|B|G|59
5JUO|1|B|A|60
5JUO|1|B|A|61
5JUO|1|B|A|62
5JUO|1|B|A|63
5JUO|1|B|G|64
5JUO|1|B|A|65
5JUO|1|B|A|66
5JUO|1|B|A|67
5JUO|1|B|C|68
*
5JUO|1|B|G|75
5JUO|1|B|G|76
5JUO|1|B|A|77
5JUO|1|B|U|78
5JUO|1|B|U|79
*
5JUO|1|B|A|106
5JUO|1|B|A|107
5JUO|1|B|A|108
5JUO|1|B|A|109
5JUO|1|B|G|110
*
5JUO|1|B|C|321
5JUO|1|B|U|322
5JUO|1|B|A|323
5JUO|1|B|A|324
5JUO|1|B|A|325
5JUO|1|B|U|326
5JUO|1|B|A|327
5JUO|1|B|U|328
5JUO|1|B|U|329
5JUO|1|B|G|330
5JUO|1|B|G|331
5JUO|1|B|C|332
5JUO|1|B|G|333
*
5JUO|1|C|C|30
5JUO|1|C|G|31
5JUO|1|C|C|32
5JUO|1|C|A|33
5JUO|1|C|U|34
5JUO|1|C|C|35
5JUO|1|C|G|36
5JUO|1|C|A|37
5JUO|1|C|U|38
5JUO|1|C|G|39
5JUO|1|C|A|40
5JUO|1|C|A|41
5JUO|1|C|G|42
*
5JUO|1|C|U|102
5JUO|1|C|G|103
5JUO|1|C|A|104
5JUO|1|C|A|105
5JUO|1|C|C|106
5JUO|1|C|G|107
*
5JUO|1|C|C|115
5JUO|1|C|G|116
*
5JUO|1|C|C|137
5JUO|1|C|A|138
5JUO|1|C|U|139

Current chains

Chain B
25S ribosomal RNA
Chain C
5.8S ribosomal RNA

Nearby chains

Chain CA
uL23 (yeast L25)
Chain H
uL4 (yeast L4)
Chain MA
uL29 (yeast L35)
Chain NA
eL36 (yeast L36)
Chain OA
eL37 (yeast L37)
Chain Q
eL13 (yeast L13)
Chain QA
eL39 (yeast L39)
Chain S
eL15 (yeast L15)

Coloring options:

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