J9_5JUT_001
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UAGGAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGGCGA*UCGCAUCGAUGAAG*UGAACG*CG*CAUG
- Length
- 70 nucleotides
- Bulged bases
- 5JUT|1|B|A|67, 5JUT|1|B|U|329, 5JUT|1|C|C|35, 5JUT|1|C|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUT|1|B|U|19
5JUT|1|B|A|20
5JUT|1|B|G|21
5JUT|1|B|G|22
5JUT|1|B|A|23
5JUT|1|B|G|24
5JUT|1|B|U|25
5JUT|1|B|A|26
5JUT|1|B|C|27
*
5JUT|1|B|G|58
5JUT|1|B|G|59
5JUT|1|B|A|60
5JUT|1|B|A|61
5JUT|1|B|A|62
5JUT|1|B|A|63
5JUT|1|B|G|64
5JUT|1|B|A|65
5JUT|1|B|A|66
5JUT|1|B|A|67
5JUT|1|B|C|68
*
5JUT|1|B|G|75
5JUT|1|B|G|76
5JUT|1|B|A|77
5JUT|1|B|U|78
5JUT|1|B|U|79
*
5JUT|1|B|A|106
5JUT|1|B|A|107
5JUT|1|B|A|108
5JUT|1|B|A|109
5JUT|1|B|G|110
*
5JUT|1|B|C|321
5JUT|1|B|U|322
5JUT|1|B|A|323
5JUT|1|B|A|324
5JUT|1|B|A|325
5JUT|1|B|U|326
5JUT|1|B|A|327
5JUT|1|B|U|328
5JUT|1|B|U|329
5JUT|1|B|G|330
5JUT|1|B|G|331
5JUT|1|B|C|332
5JUT|1|B|G|333
5JUT|1|B|A|334
*
5JUT|1|C|U|29
5JUT|1|C|C|30
5JUT|1|C|G|31
5JUT|1|C|C|32
5JUT|1|C|A|33
5JUT|1|C|U|34
5JUT|1|C|C|35
5JUT|1|C|G|36
5JUT|1|C|A|37
5JUT|1|C|U|38
5JUT|1|C|G|39
5JUT|1|C|A|40
5JUT|1|C|A|41
5JUT|1|C|G|42
*
5JUT|1|C|U|102
5JUT|1|C|G|103
5JUT|1|C|A|104
5JUT|1|C|A|105
5JUT|1|C|C|106
5JUT|1|C|G|107
*
5JUT|1|C|C|115
5JUT|1|C|G|116
*
5JUT|1|C|C|137
5JUT|1|C|A|138
5JUT|1|C|U|139
5JUT|1|C|G|140
Current chains
- Chain B
- 25S ribosomal RNA
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain CA
- uL23 (yeast L25)
- Chain DA
- uL24 (yeast L26)
- Chain H
- uL4 (yeast L4)
- Chain MA
- uL29 (yeast L35)
- Chain NA
- eL36 (yeast L36)
- Chain OA
- eL37 (yeast L37)
- Chain Q
- eL13 (yeast L13)
- Chain QA
- eL39 (yeast L39)
- Chain S
- eL15 (yeast L15)
Coloring options: