Loop J9_5ZLU

3D structure

PDB id: 5ZLU (explore in PDB, NAKB, or RNA 3D Hub)
Description: Ribosome Structure bound to ABC-F protein.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å

Loop

Sequence: CCGAGC*GGAAC*GGAGAGGAAAG*CGACUCCCUGAGUAG*CGAAAGGGGACCAGCCUAAAC*GGGUCGUGGGGCCCUCGGACACCGAAUCCC*GGGAUAGGUAGGGUGCCCGAGUAC*GGAAUCUGG*CUAAGGCUAAGUACUCCGG
Length: 140 nucleotides
Bulged bases: 5ZLU|1|V|A|270|||B, 5ZLU|1|V|G|270|||Y, 5ZLU|1|V|G|275, 5ZLU|1|V|A|276, 5ZLU|1|V|C|277, 5ZLU|1|V|C|279, 5ZLU|1|V|G|281, 5ZLU|1|V|A|282, 5ZLU|1|V|A|359, 5ZLU|1|V|A|363|||A, 5ZLU|1|V|G|363|||F, 5ZLU|1|V|G|372, 5ZLU|1|V|U|373, 5ZLU|1|V|C|404, 5ZLU|1|V|U|405
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5ZLU|1|V|C|40
5ZLU|1|V|C|41
5ZLU|1|V|G|43
5ZLU|1|V|A|44
5ZLU|1|V|G|45
5ZLU|1|V|C|46
*
5ZLU|1|V|G|179
5ZLU|1|V|G|180
5ZLU|1|V|A|181
5ZLU|1|V|A|182
5ZLU|1|V|C|183
*
5ZLU|1|V|G|214
5ZLU|1|V|G|215
5ZLU|1|V|A|216
5ZLU|1|V|G|217
5ZLU|1|V|A|218
5ZLU|1|V|G|219
5ZLU|1|V|G|220
5ZLU|1|V|A|221
5ZLU|1|V|A|222
5ZLU|1|V|A|223
5ZLU|1|V|G|224
*
5ZLU|1|V|C|231
5ZLU|1|V|G|232
5ZLU|1|V|A|233
5ZLU|1|V|C|234
5ZLU|1|V|U|235
5ZLU|1|V|C|236
5ZLU|1|V|C|237
5ZLU|1|V|C|238
5ZLU|1|V|U|239
5ZLU|1|V|G|240
5ZLU|1|V|A|241
5ZLU|1|V|G|242
5ZLU|1|V|U|243
5ZLU|1|V|A|244
5ZLU|1|V|G|245
*
5ZLU|1|V|C|253
5ZLU|1|V|G|254
5ZLU|1|V|A|255
5ZLU|1|V|A|256
5ZLU|1|V|A|257
5ZLU|1|V|G|258
5ZLU|1|V|G|259
5ZLU|1|V|G|260
5ZLU|1|V|G|261
5ZLU|1|V|A|262
5ZLU|1|V|C|263
5ZLU|1|V|C|264
5ZLU|1|V|A|265
5ZLU|1|V|G|266
5ZLU|1|V|C|267
5ZLU|1|V|C|268
5ZLU|1|V|U|269
5ZLU|1|V|A|270
5ZLU|1|V|A|270|||A
5ZLU|1|V|A|270|||B
5ZLU|1|V|C|270|||C
*
5ZLU|1|V|G|270|||W
5ZLU|1|V|G|270|||X
5ZLU|1|V|G|270|||Y
5ZLU|1|V|U|270|||Z
5ZLU|1|V|C|271
5ZLU|1|V|G|271|||A
5ZLU|1|V|U|271|||B
5ZLU|1|V|G|271|||C
5ZLU|1|V|G|272
5ZLU|1|V|G|273
5ZLU|1|V|G|273|||A
5ZLU|1|V|C|273|||B
5ZLU|1|V|C|273|||C
5ZLU|1|V|C|273|||D
5ZLU|1|V|U|273|||E
5ZLU|1|V|C|273|||F
5ZLU|1|V|G|274
5ZLU|1|V|G|275
5ZLU|1|V|A|276
5ZLU|1|V|C|277
5ZLU|1|V|A|278
5ZLU|1|V|C|279
5ZLU|1|V|C|280
5ZLU|1|V|G|281
5ZLU|1|V|A|282
5ZLU|1|V|A|283
5ZLU|1|V|U|284
5ZLU|1|V|C|285
5ZLU|1|V|C|286
5ZLU|1|V|C|287
*
5ZLU|1|V|G|354
5ZLU|1|V|G|355
5ZLU|1|V|G|356
5ZLU|1|V|A|357
5ZLU|1|V|U|358
5ZLU|1|V|A|359
5ZLU|1|V|G|360
5ZLU|1|V|G|361
5ZLU|1|V|U|362
5ZLU|1|V|A|363|||A
5ZLU|1|V|G|363|||B
5ZLU|1|V|G|363|||C
5ZLU|1|V|G|363|||D
5ZLU|1|V|U|363|||E
5ZLU|1|V|G|363|||F
5ZLU|1|V|C|364
5ZLU|1|V|C|365
5ZLU|1|V|C|366
5ZLU|1|V|G|370
5ZLU|1|V|A|371
5ZLU|1|V|G|372
5ZLU|1|V|U|373
5ZLU|1|V|A|374
5ZLU|1|V|C|375
*
5ZLU|1|V|G|399
5ZLU|1|V|G|400
5ZLU|1|V|A|401
5ZLU|1|V|A|402
5ZLU|1|V|U|403
5ZLU|1|V|C|404
5ZLU|1|V|U|405
5ZLU|1|V|G|406
5ZLU|1|V|G|407
*
5ZLU|1|V|C|420
5ZLU|1|V|U|421
5ZLU|1|V|A|422
5ZLU|1|V|A|423
5ZLU|1|V|G|424
5ZLU|1|V|G|425
5ZLU|1|V|C|426
5ZLU|1|V|U|427
5ZLU|1|V|A|428
5ZLU|1|V|A|429
5ZLU|1|V|G|430
5ZLU|1|V|U|431
5ZLU|1|V|A|432
5ZLU|1|V|C|433
5ZLU|1|V|U|434
5ZLU|1|V|C|435
5ZLU|1|V|C|436
5ZLU|1|V|G|438
5ZLU|1|V|G|439

Current chains

Chain V: 23S ribosomal RNA

Nearby chains

Chain AA: 50S ribosomal protein L35
Chain b: 50S ribosomal protein L4
Chain i: 50S ribosomal protein L15
Chain w: 50S ribosomal protein L31
Chain z: 50S ribosomal protein L34

J9_5ZLU_001