J9_6HCF_001
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GACGUGGCGACC*GAGGAAAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUCGAUGAAG*CGAACG*CG*UACGCC
- Length
- 67 nucleotides
- Bulged bases
- 6HCF|1|52|A|66, 6HCF|1|82|U|34, 6HCF|1|82|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|52|G|16
6HCF|1|52|A|17
6HCF|1|52|C|18
6HCF|1|52|G|19
6HCF|1|52|U|20
6HCF|1|52|G|21
6HCF|1|52|G|22
6HCF|1|52|C|23
6HCF|1|52|G|24
6HCF|1|52|A|25
6HCF|1|52|C|26
6HCF|1|52|C|27
*
6HCF|1|52|G|55
6HCF|1|52|A|56
6HCF|1|52|G|57
6HCF|1|52|G|58
6HCF|1|52|A|59
6HCF|1|52|A|60
6HCF|1|52|A|61
6HCF|1|52|A|62
6HCF|1|52|G|63
6HCF|1|52|A|64
6HCF|1|52|A|65
6HCF|1|52|A|66
6HCF|1|52|C|67
*
6HCF|1|52|G|74
6HCF|1|52|G|75
6HCF|1|52|A|76
6HCF|1|52|U|77
6HCF|1|52|U|78
*
6HCF|1|52|A|105
6HCF|1|52|A|106
6HCF|1|52|G|107
6HCF|1|52|A|108
6HCF|1|52|G|109
*
6HCF|1|52|C|332
6HCF|1|52|U|333
6HCF|1|52|A|334
6HCF|1|52|A|335
6HCF|1|52|A|336
6HCF|1|52|U|337
6HCF|1|52|A|338
6HCF|1|52|C|339
*
6HCF|1|82|G|33
6HCF|1|82|U|34
6HCF|1|82|C|35
6HCF|1|82|G|36
6HCF|1|82|A|37
6HCF|1|82|U|38
6HCF|1|82|G|39
6HCF|1|82|A|40
6HCF|1|82|A|41
6HCF|1|82|G|42
*
6HCF|1|82|C|101
6HCF|1|82|G|102
6HCF|1|82|A|103
6HCF|1|82|A|104
6HCF|1|82|C|105
6HCF|1|82|G|106
*
6HCF|1|82|C|113
6HCF|1|82|G|114
*
6HCF|1|82|U|136
6HCF|1|82|A|137
6HCF|1|82|C|138
6HCF|1|82|G|139
6HCF|1|82|C|140
6HCF|1|82|C|141
Current chains
- Chain 52
- 28S ribosomal RNA
- Chain 82
- 5.8S ribosomal RNA
Nearby chains
- Chain L3
- eL13
- Chain N3
- Ribosomal protein L15
- Chain X3
- uL23
- Chain h3
- uL29
- Chain i3
- 60S ribosomal protein L36
- Chain j3
- Ribosomal protein L37
- Chain l3
- eL39
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