Loop J9_6HCF

3D structure

PDB id: 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

Loop

Sequence: AGAAGACCCUGUUGAGCUUGACUCUAGUC*GGUGGGGAGUUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAAGUUACCACAGGGAUAACUGGCUUGUGG*CUUUUUGAUCCUUCGAUGUC*GGUUUAG*UAGUUU
Length: 132 nucleotides
Bulged bases: 6HCF|1|52|A|3908, 6HCF|1|52|G|3922, 6HCF|1|52|A|4376, 6HCF|1|52|A|4379, 6HCF|1|52|A|4385, 6HCF|1|52|A|4394, 6HCF|1|52|U|4437, 6HCF|1|52|G|4451, 6HCF|1|52|U|4452, 6HCF|1|52|U|4531, 6HCF|1|52|U|4555, 6HCF|1|52|U|4556
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6HCF|1|52|A|3903
6HCF|1|52|G|3904
6HCF|1|52|A|3905
6HCF|1|52|A|3906
6HCF|1|52|G|3907
6HCF|1|52|A|3908
6HCF|1|52|C|3909
6HCF|1|52|C|3910
6HCF|1|52|C|3911
6HCF|1|52|U|3912
6HCF|1|52|G|3913
6HCF|1|52|U|3914
6HCF|1|52|U|3915
6HCF|1|52|G|3916
6HCF|1|52|A|3917
6HCF|1|52|G|3918
6HCF|1|52|C|3919
6HCF|1|52|U|3920
6HCF|1|52|U|3921
6HCF|1|52|G|3922
6HCF|1|52|A|3923
6HCF|1|52|C|3924
6HCF|1|52|U|3925
6HCF|1|52|C|3926
6HCF|1|52|U|3927
6HCF|1|52|A|3928
6HCF|1|52|G|3929
6HCF|1|52|U|3930
6HCF|1|52|C|3931
*
6HCF|1|52|G|4179
6HCF|1|52|G|4180
6HCF|1|52|U|4181
6HCF|1|52|G|4182
6HCF|1|52|G|4183
6HCF|1|52|G|4184
6HCF|1|52|G|4185
6HCF|1|52|A|4186
6HCF|1|52|G|4187
6HCF|1|52|U|4188
6HCF|1|52|U|4189
6HCF|1|52|U|4190
6HCF|1|52|G|4191
*
6HCF|1|52|C|4204
6HCF|1|52|A|4205
*
6HCF|1|52|U|4227
6HCF|1|52|G|4228
6HCF|1|52|U|4229
6HCF|1|52|C|4230
*
6HCF|1|52|G|4331
6HCF|1|52|C|4332
6HCF|1|52|C|4333
6HCF|1|52|U|4334
6HCF|1|52|C|4335
6HCF|1|52|A|4336
6HCF|1|52|C|4337
6HCF|1|52|G|4338
6HCF|1|52|A|4339
6HCF|1|52|U|4340
6HCF|1|52|C|4341
6HCF|1|52|C|4342
*
6HCF|1|52|G|4370
6HCF|1|52|G|4371
6HCF|1|52|U|4372
6HCF|1|52|G|4373
6HCF|1|52|U|4374
6HCF|1|52|C|4375
6HCF|1|52|A|4376
6HCF|1|52|G|4377
6HCF|1|52|A|4378
6HCF|1|52|A|4379
6HCF|1|52|A|4380
6HCF|1|52|A|4381
6HCF|1|52|G|4382
6HCF|1|52|U|4383
6HCF|1|52|U|4384
6HCF|1|52|A|4385
6HCF|1|52|C|4386
6HCF|1|52|C|4387
6HCF|1|52|A|4388
6HCF|1|52|C|4389
6HCF|1|52|A|4390
6HCF|1|52|G|4391
6HCF|1|52|G|4392
6HCF|1|52|G|4393
6HCF|1|52|A|4394
6HCF|1|52|U|4395
6HCF|1|52|A|4396
6HCF|1|52|A|4397
6HCF|1|52|C|4398
6HCF|1|52|U|4399
6HCF|1|52|G|4400
6HCF|1|52|G|4401
6HCF|1|52|C|4402
6HCF|1|52|U|4403
6HCF|1|52|U|4404
6HCF|1|52|G|4405
6HCF|1|52|U|4406
6HCF|1|52|G|4407
6HCF|1|52|G|4408
*
6HCF|1|52|C|4434
6HCF|1|52|U|4435
6HCF|1|52|U|4436
6HCF|1|52|U|4437
6HCF|1|52|U|4438
6HCF|1|52|U|4439
6HCF|1|52|G|4440
6HCF|1|52|A|4441
6HCF|1|52|U|4442
6HCF|1|52|C|4443
6HCF|1|52|C|4444
6HCF|1|52|U|4445
6HCF|1|52|U|4446
6HCF|1|52|C|4447
6HCF|1|52|G|4448
6HCF|1|52|A|4449
6HCF|1|52|U|4450
6HCF|1|52|G|4451
6HCF|1|52|U|4452
6HCF|1|52|C|4453
*
6HCF|1|52|G|4528
6HCF|1|52|G|4529
6HCF|1|52|U|4530
6HCF|1|52|U|4531
6HCF|1|52|U|4532
6HCF|1|52|A|4533
6HCF|1|52|G|4534
*
6HCF|1|52|U|4552
6HCF|1|52|A|4553
6HCF|1|52|G|4554
6HCF|1|52|U|4555
6HCF|1|52|U|4556
6HCF|1|52|U|4557

Current chains

Chain 52: 28S ribosomal RNA

Nearby chains

Chain 1: nascent chain
Chain 23: Transfer RNA; tRNA
Chain A3: Ribosomal protein L8
Chain B3: uL3
Chain C3: uL4
Chain I3: 60S ribosomal protein L10
Chain N3: Ribosomal protein L15
Chain Q3: eL18
Chain T3: eL21
Chain a3: uL15
Chain b3: eL29
Chain j1: eRF1(AAQ)
Chain o3: eL42

J9_6HCF_002