J9_6HCJ_002
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGGCGACC*GAGGAAAAGAAAC*GGAUU*AAGAG*CUAAAUACCGG*CGUCGAUGAAG*CGAACG*CG*UAC
- Length
- 65 nucleotides
- Bulged bases
- 6HCJ|1|51|A|66, 6HCJ|1|51|U|337, 6HCJ|1|51|C|340, 6HCJ|1|81|U|34, 6HCJ|1|81|G|36, 6HCJ|1|81|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCJ|1|51|G|19
6HCJ|1|51|U|20
6HCJ|1|51|G|21
6HCJ|1|51|G|22
6HCJ|1|51|C|23
6HCJ|1|51|G|24
6HCJ|1|51|A|25
6HCJ|1|51|C|26
6HCJ|1|51|C|27
*
6HCJ|1|51|G|55
6HCJ|1|51|A|56
6HCJ|1|51|G|57
6HCJ|1|51|G|58
6HCJ|1|51|A|59
6HCJ|1|51|A|60
6HCJ|1|51|A|61
6HCJ|1|51|A|62
6HCJ|1|51|G|63
6HCJ|1|51|A|64
6HCJ|1|51|A|65
6HCJ|1|51|A|66
6HCJ|1|51|C|67
*
6HCJ|1|51|G|74
6HCJ|1|51|G|75
6HCJ|1|51|A|76
6HCJ|1|51|U|77
6HCJ|1|51|U|78
*
6HCJ|1|51|A|105
6HCJ|1|51|A|106
6HCJ|1|51|G|107
6HCJ|1|51|A|108
6HCJ|1|51|G|109
*
6HCJ|1|51|C|332
6HCJ|1|51|U|333
6HCJ|1|51|A|334
6HCJ|1|51|A|335
6HCJ|1|51|A|336
6HCJ|1|51|U|337
6HCJ|1|51|A|338
6HCJ|1|51|C|339
6HCJ|1|51|C|340
6HCJ|1|51|G|341
6HCJ|1|51|G|342
*
6HCJ|1|81|C|32
6HCJ|1|81|G|33
6HCJ|1|81|U|34
6HCJ|1|81|C|35
6HCJ|1|81|G|36
6HCJ|1|81|A|37
6HCJ|1|81|U|38
6HCJ|1|81|G|39
6HCJ|1|81|A|40
6HCJ|1|81|A|41
6HCJ|1|81|G|42
*
6HCJ|1|81|C|101
6HCJ|1|81|G|102
6HCJ|1|81|A|103
6HCJ|1|81|A|104
6HCJ|1|81|C|105
6HCJ|1|81|G|106
*
6HCJ|1|81|C|113
6HCJ|1|81|G|114
*
6HCJ|1|81|U|136
6HCJ|1|81|A|137
6HCJ|1|81|C|138
Current chains
- Chain 51
- 28S ribosomal RNA
- Chain 81
- 5.8S ribosomal RNA
Nearby chains
- Chain C3
- uL4
- Chain L3
- eL13
- Chain N3
- Ribosomal protein L15
- Chain X3
- uL23
- Chain h3
- uL29
- Chain i3
- 60S ribosomal protein L36
- Chain j3
- Ribosomal protein L37
- Chain l3
- eL39
Coloring options: