J9_6HCM_001
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- GACGUGGCGACC*GAGGAAAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUCGAUGAAG*CGAACG*CG*UACGCC
- Length
- 67 nucleotides
- Bulged bases
- 6HCM|1|52|A|66, 6HCM|1|82|U|34, 6HCM|1|82|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCM|1|52|G|16
6HCM|1|52|A|17
6HCM|1|52|C|18
6HCM|1|52|G|19
6HCM|1|52|U|20
6HCM|1|52|G|21
6HCM|1|52|G|22
6HCM|1|52|C|23
6HCM|1|52|G|24
6HCM|1|52|A|25
6HCM|1|52|C|26
6HCM|1|52|C|27
*
6HCM|1|52|G|55
6HCM|1|52|A|56
6HCM|1|52|G|57
6HCM|1|52|G|58
6HCM|1|52|A|59
6HCM|1|52|A|60
6HCM|1|52|A|61
6HCM|1|52|A|62
6HCM|1|52|G|63
6HCM|1|52|A|64
6HCM|1|52|A|65
6HCM|1|52|A|66
6HCM|1|52|C|67
*
6HCM|1|52|G|74
6HCM|1|52|G|75
6HCM|1|52|A|76
6HCM|1|52|U|77
6HCM|1|52|U|78
*
6HCM|1|52|A|105
6HCM|1|52|A|106
6HCM|1|52|G|107
6HCM|1|52|A|108
6HCM|1|52|G|109
*
6HCM|1|52|C|332
6HCM|1|52|U|333
6HCM|1|52|A|334
6HCM|1|52|A|335
6HCM|1|52|A|336
6HCM|1|52|U|337
6HCM|1|52|A|338
6HCM|1|52|C|339
*
6HCM|1|82|G|33
6HCM|1|82|U|34
6HCM|1|82|C|35
6HCM|1|82|G|36
6HCM|1|82|A|37
6HCM|1|82|U|38
6HCM|1|82|G|39
6HCM|1|82|A|40
6HCM|1|82|A|41
6HCM|1|82|G|42
*
6HCM|1|82|C|101
6HCM|1|82|G|102
6HCM|1|82|A|103
6HCM|1|82|A|104
6HCM|1|82|C|105
6HCM|1|82|G|106
*
6HCM|1|82|C|113
6HCM|1|82|G|114
*
6HCM|1|82|U|136
6HCM|1|82|A|137
6HCM|1|82|C|138
6HCM|1|82|G|139
6HCM|1|82|C|140
6HCM|1|82|C|141
Current chains
- Chain 52
- 28S ribosomal RNA
- Chain 82
- 5.8S ribosomal RNA
Nearby chains
- Chain L3
- eL13
- Chain N3
- Ribosomal protein L15
- Chain X3
- uL23
- Chain h3
- uL29
- Chain i3
- 60S ribosomal protein L36
- Chain j3
- Ribosomal protein L37
- Chain l3
- eL39
Coloring options: