J9_6XIQ_001
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- AGGAGUACC*GAGGAAAAGAAAC*GGAUUG*CAAAAG*CUAAAUAUUGG*CAUCGAUGAAGA*UGAACG*CG*CAU
- Length
- 68 nucleotides
- Bulged bases
- 6XIQ|1|1|U|25, 6XIQ|1|1|A|67, 6XIQ|1|1|A|77, 6XIQ|1|1|A|106, 6XIQ|1|1|A|107, 6XIQ|1|1|G|330, 6XIQ|1|4|A|33, 6XIQ|1|4|U|34, 6XIQ|1|4|U|38, 6XIQ|1|4|A|105
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIQ|1|1|A|20
6XIQ|1|1|G|21
6XIQ|1|1|G|22
6XIQ|1|1|A|23
6XIQ|1|1|G|24
6XIQ|1|1|U|25
6XIQ|1|1|A|26
6XIQ|1|1|C|27
6XIQ|1|1|C|28
*
6XIQ|1|1|G|56
6XIQ|1|1|A|57
6XIQ|1|1|G|58
6XIQ|1|1|G|59
6XIQ|1|1|A|60
6XIQ|1|1|A|61
6XIQ|1|1|A|62
6XIQ|1|1|A|63
6XIQ|1|1|G|64
6XIQ|1|1|A|65
6XIQ|1|1|A|66
6XIQ|1|1|A|67
6XIQ|1|1|C|68
*
6XIQ|1|1|G|75
6XIQ|1|1|G|76
6XIQ|1|1|A|77
6XIQ|1|1|U|78
6XIQ|1|1|U|79
6XIQ|1|1|G|80
*
6XIQ|1|1|C|105
6XIQ|1|1|A|106
6XIQ|1|1|A|107
6XIQ|1|1|A|108
6XIQ|1|1|A|109
6XIQ|1|1|G|110
*
6XIQ|1|1|C|321
6XIQ|1|1|U|322
6XIQ|1|1|A|323
6XIQ|1|1|A|324
6XIQ|1|1|A|325
6XIQ|1|1|U|326
6XIQ|1|1|A|327
6XIQ|1|1|U|328
6XIQ|1|1|U|329
6XIQ|1|1|G|330
6XIQ|1|1|G|331
*
6XIQ|1|4|C|32
6XIQ|1|4|A|33
6XIQ|1|4|U|34
6XIQ|1|4|C|35
6XIQ|1|4|G|36
6XIQ|1|4|A|37
6XIQ|1|4|U|38
6XIQ|1|4|G|39
6XIQ|1|4|A|40
6XIQ|1|4|A|41
6XIQ|1|4|G|42
6XIQ|1|4|A|43
*
6XIQ|1|4|U|102
6XIQ|1|4|G|103
6XIQ|1|4|A|104
6XIQ|1|4|A|105
6XIQ|1|4|C|106
6XIQ|1|4|G|107
*
6XIQ|1|4|C|115
6XIQ|1|4|G|116
*
6XIQ|1|4|C|137
6XIQ|1|4|A|138
6XIQ|1|4|U|139
Current chains
- Chain 1
- 35S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- RPL4A isoform 1
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
Coloring options: