Motif HL_00182.1 Version HL_00182.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-3 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_4FRN_008 | 4FRN | 0.5470 | 2 | B | Cobalamin riboswitch aptamer domain | G | 90 | A | 92 | A | 93 | G | 94 | G | 95 | A | 96 | A | 98 | C | 99 | cWW | |
2 | HL_5X6B_004 | 5X6B | 0.7066 | 1 | P | tRNA | A | 30 | U | 32 | G | 33 | C | 34 | A | 35 | G | 36 | A | 37 | U | 38 | ncWW | |
3 | HL_7JRR_002 | 7JRR | 0.4768 | 1 | A | RNA (50-MER) | G | 39 | A | 41 | U | 42 | G | 43 | G | 44 | U | 45 | U | 46 | C | 47 | cWW | |
4 | HL_7JRR_001 | 7JRR | 0.5206 | 1 | A | RNA (50-MER) | G | 12 | A | 14 | C | 15 | C | 16 | A | 17 | U | 18 | C | 19 | C | 20 | cWW | |
5 | HL_2Z75_003 | 2Z75 | 0.3306 | 1 | B | glmS ribozyme | C | 78 | U | 79 | C | 81 | C | 82 | U | 83 | G | 84 | C | 85 | G | 86 | cWW | ncSH |
6 | HL_3D0U_002 | 3D0U | 0.0000 | 1 | A | Lysine Riboswitch RNA | U | 90 | C | 92 | C | 93 | U | 94 | C | 95 | C | 96 | C | 97 | G | 98 | cWW | |
7 | HL_3DIL_002 | 3DIL | 0.0949 | 1 | A | RNA (174-MER) | U | 93 | U | 94 | C | 96 | U | 97 | C | 98 | C | 99 | C | 100 | G | 101 | cWW | |
8 | HL_6YL5_005 | 6YL5 | 0.3963 | 2 | I | Chains: A,B,C,D,E,F,G,H,I,J,K,L | C | 15 | G | 17 | C | 18 | U | 19 | C | 21 | C | 22 | U | 23 | G | 24 | cWW | |
9 | HL_6YML_001 | 6YML | 0.4085 | 2 | A | Chains: A,C | C | 15 | G | 17 | C | 18 | U | 19 | C | 21 | C | 22 | U | 23 | G | 24 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UUCCUCCCG | 2 |
CGGCUUCCUG | 2 |
GCAAGGAGAC | 1 |
ACUGCAGAU | 1 |
GGAUGGUUC | 1 |
GAACCAUCC | 1 |
CUUCCUGCG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UCCUCCC | 2 |
GGCUUCCU | 2 |
CAAGGAGA | 1 |
CUGCAGA | 1 |
GAUGGUU | 1 |
AACCAUC | 1 |
UUCCUGC | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (9)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.05 | Avg 0.52 | Max 0.96
Coloring options: