#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 81-82-3
1 HL_4FRN_0084FRN0.54702BCobalamin riboswitch aptamer domainG90A92A93G94G95A96A98C99cWW
2 HL_5X6B_0045X6B0.70661P tRNAA30U32G33C34A35G36A37U38ncWW
3 HL_7JRR_0027JRR0.47681ARNA (50-MER)G39A41U42G43G44U45U46C47cWW
4 HL_7JRR_0017JRR0.52061ARNA (50-MER)G12A14C15C16A17U18C19C20cWW
5 HL_2Z75_0032Z750.33061B glmS ribozymeC78U79C81C82U83G84C85G86cWWncSH
6 HL_3D0U_0023D0U0.00001ALysine Riboswitch RNAU90C92C93U94C95C96C97G98cWW
7 HL_3DIL_0023DIL0.09491ARNA (174-MER)U93U94C96U97C98C99C100G101cWW
8 HL_6YL5_0056YL50.39632IChains: A,B,C,D,E,F,G,H,I,J,K,LC15G17C18U19C21C22U23G24cWW
9 HL_6YML_0016YML0.40852AChains: A,CC15G17C18U19C21C22U23G24cWW

3D structures

Complete motif including flanking bases
SequenceCounts
UUCCUCCCG2
CGGCUUCCUG2
GCAAGGAGAC1
ACUGCAGAU1
GGAUGGUUC1
GAACCAUCC1
CUUCCUGCG1
Non-Watson-Crick part of the motif
SequenceCounts
UCCUCCC2
GGCUUCCU2
CAAGGAGA1
CUGCAGA1
GAUGGUU1
AACCAUC1
UUCCUGC1

Release history

Release3.88
Date2024-09-11
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (9)
  • Basepair signature
    cWW-F-F-F-F-F-F
    Heat map statistics
    Min 0.05 | Avg 0.52 | Max 0.96
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