Motif HL_00394.1 Version HL_00394.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3QSY_003 | 3QSY | 0.0000 | 1 | D | tRNA | C | 51 | G | 52 | G | 53 | U | 54 | U | 55 | A | 57 | A | 58 | A | 59 | U | 60 | C | 61 | C | 62 | G | 63 | cWW | ncWW | ncWW | |
| 2 | HL_4CUX_034 | 4CUX | 0.9253 | 2 | 2 | 18S RRNA | C | 1549 | A | 1550 | U | 1551 | U | 1552 | G | 1553 | A | 1555 | A | 1556 | U | 1557 | U | 1558 | U | 1560 | U | 1561 | G | 1562 | cWW | ncWW | ncWH | ntWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGUUCAAAUCCG | 1 |
| CAUUGUAAUUAUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGUUCAAAUCC | 1 |
| AUUGUAAUUAUU | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_00394.1 | Only in the parent motif |
|---|---|---|---|
| HL_72489.1 Compare | HL_3QSY_003 | HL_4CUX_034 | HL_1VWW_025 |
| HL_75984.1 Compare | HL_4CUX_034 | HL_3QSY_003 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.93 | Avg 0.46 | Max 0.93
Coloring options: