Motif HL_72489.1 Version HL_72489.1 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3QSY_003 | 3QSY | 0.0000 | 1 | D | C | 51 | G | 52 | G | 53 | U | 54 | U | 55 | A | 57 | A | 58 | A | 59 | U | 60 | C | 61 | C | 62 | G | 63 | cWW | ncWW | ncWW |
| 2 | HL_1VWW_025 | 1VWW | 0.8994 | -4 | 5 | U | 1861 | U | 1862 | U | 1863 | G | 1864 | G | 1865 | A | 1867 | A | 1868 | G | 1869 | C | 1870 | A | 1871 | G | 1872 | A | 1873 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGUUCAAAUCCG | 1 |
| UGUAACAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGUUCAAAUCC | 1 |
| GUAACA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_72489.1 | Only in the parent motif |
|---|---|---|---|
| HL_54751.3 Compare | HL_3QSY_003 | HL_1VWW_025 | HL_1FJG_023, HL_4CUX_021 |
Children motifs
| Child motif | Common motif instances | Only in HL_72489.1 | Only in the child motif |
|---|---|---|---|
| HL_00394.1 Compare | HL_3QSY_003 | HL_1VWW_025 | HL_4CUX_034 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.90 | Avg 0.45 | Max 0.90
Coloring options: