RNA 3D Hub //

Motif HL_01008.1 Version HL_01008.1 of this group appears in releases 3.2 to 3.2

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 41-4
1 HL_4V8P_1364V8P0.66360 D1 LSU rRNAU2558U2559U2560A2561cWW
2 HL_2IZN_0012IZN0.11922 RRNA (19-mer)G8||||P_1A9||||P_1U11||||P_1C13||||P_1cWW
3 HL_2IZN_0052IZN0.11922 RRNA (19-mer)G8||||P_PA9||||P_PU11||||P_PC13||||P_P
4 HL_1ZDJ_0011ZDJ0.08372 RRNA (8-mer)G8||||P_1A9||||P_1C11||||P_1C13||||P_1cWW
5 HL_1ZDJ_0051ZDJ0.08372 RRNA (8-mer)G8||||P_PA9||||P_PC11||||P_PC13||||P_P
6 HL_5MSF_0055MSF0.00002 RRNA (18-mer)G7||||P_PA8||||P_PC10||||P_PC12||||P_P
7 HL_5MSF_0015MSF0.00002 RRNA (18-mer)G7||||P_1A8||||P_1C10||||P_1C12||||P_1cWW
8 HL_1U1Y_0051U1Y0.06742 RRNA (17-mer)G7||||P_PA8||||P_PC10||||P_PC12||||P_P
9 HL_1U1Y_0011U1Y0.06742 RRNA (17-mer)G7||||P_1A8||||P_1C10||||P_1C12||||P_1cWW
10 HL_7MSF_0057MSF0.15572 RRNA (14-mer)C5||||P_PA6||||P_PC8||||P_PG10||||P_P
11 HL_7MSF_0017MSF0.15572 RRNA (14-mer)C5||||P_1A6||||P_1C8||||P_1G10||||P_1cWW
12 HL_4V5O_0474V5O0.39443 BA SSU rRNAU442A443U445A448cWW
13 HL_4V88_1974V880.49013 A6 SSU rRNAU450A451U453A456cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAUCAC6
GAUUAC2
CAACAG2
UAAUUCA2
UUUA1
Non-Watson-Crick part of the motif
SequenceCounts
AUCA6
AUUA2
AACA2
AAUUC2
UU1

Release history

Release3.2
Date2018-09-26
StatusNew id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
Basepair signature
cWW-R
Heat map statistics
Min 0.07 | Avg 0.28 | Max 0.91
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