Motif HL_01008.2 Version HL_01008.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V8P_136 | 4V8P | 0.6636 | 0 | D1 | LSU rRNA | U | 2558 | U | 2559 | U | 2560 | A | 2561 | cWW |
| 2 | HL_2IZN_001 | 2IZN | 0.1192 | 2 | R | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | U | 11||||P_1 | C | 13||||P_1 | cWW |
| 3 | HL_2IZN_005 | 2IZN | 0.1192 | 2 | R | RNA (19-mer) | G | 8||||P_P | A | 9||||P_P | U | 11||||P_P | C | 13||||P_P | |
| 4 | HL_5MSF_005 | 5MSF | 0.0000 | 2 | R | RNA (18-mer) | G | 7||||P_P | A | 8||||P_P | C | 10||||P_P | C | 12||||P_P | |
| 5 | HL_5MSF_001 | 5MSF | 0.0000 | 2 | R | RNA (18-mer) | G | 7||||P_1 | A | 8||||P_1 | C | 10||||P_1 | C | 12||||P_1 | cWW |
| 6 | HL_1U1Y_005 | 1U1Y | 0.0674 | 2 | R | RNA (17-mer) | G | 7||||P_P | A | 8||||P_P | C | 10||||P_P | C | 12||||P_P | |
| 7 | HL_1U1Y_001 | 1U1Y | 0.0674 | 2 | R | RNA (17-mer) | G | 7||||P_1 | A | 8||||P_1 | C | 10||||P_1 | C | 12||||P_1 | cWW |
| 8 | HL_7MSF_005 | 7MSF | 0.1557 | 2 | R | RNA (14-mer) | C | 5||||P_P | A | 6||||P_P | C | 8||||P_P | G | 10||||P_P | |
| 9 | HL_7MSF_001 | 7MSF | 0.1557 | 2 | R | RNA (14-mer) | C | 5||||P_1 | A | 6||||P_1 | C | 8||||P_1 | G | 10||||P_1 | cWW |
| 10 | HL_4V5O_047 | 4V5O | 0.3944 | 3 | BA | SSU rRNA | U | 442 | A | 443 | U | 445 | A | 448 | cWW |
| 11 | HL_4V88_197 | 4V88 | 0.4901 | 3 | A6 | SSU rRNA | U | 450 | A | 451 | U | 453 | A | 456 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUCAC | 4 |
| GAUUAC | 2 |
| CAACAG | 2 |
| UAAUUCA | 2 |
| UUUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUCA | 4 |
| AUUA | 2 |
| AACA | 2 |
| AAUUC | 2 |
| UU | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
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