Motif HL_01181.1 Version HL_01181.1 of this group appears in releases 3.2 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1L2X_001 | 1L2X | 0.0000 | 1 | A | RNA pseudoknot | G | 7 | C | 8 | A | 9 | C | 10 | C | 11 | G | 12 | C | 14 | |||
| 2 | HL_2A43_001 | 2A43 | 0.1275 | 1 | GNRA-like with tWH | A | Putative RNA-dependent RNA polymerase ribosomal frameshift site | G | 6 | C | 7 | A | 8 | C | 9 | C | 10 | G | 11 | C | 13 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCACCGUC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CACCGU | 2 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- GNRA-like with tWH (1)
- Basepair signature
- cWW-tWH-R-R-R
- Heat map statistics
- Min 0.13 | Avg 0.06 | Max 0.13
Coloring options: