Hairpin Loop Motif Atlas Release 3.16

#	Motif	Num Nts	Instances
1	HL_43074.3 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match GNRA (234) GNRA variation (11) GNRA with GA tSW pair (3) GNRA related (2)	6	251
2	HL_33239.7 View exemplar Basepair signature: cWW-R-R-tWH-R-R-R History status: Exact match T-loop with 2 stacked bulged bases (89) T-loop with 2 bulged bases not stacked (9)	9	100
3	HL_79299.4 View exemplar Basepair signature: cWW-tSW-R History status: Exact match UNCG (40) UNCG variation (3) Other HL (2) GNRA related (1)	5	46
4	HL_59710.3 View exemplar Basepair signature: cWW-bif-R-R-R-R-R History status: Exact match tRNA anticodon loop (22) Anticodon loop related (3)	9	28
5	HL_60381.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R History status: Exact match GNRA wlth tandem sheared (7) T-loop related (1) GNRA related (1) GNRA with extra cWW (1)	8	21
6	HL_46142.3 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match Pseudoknot geometry (16)	8	19
7	HL_32512.2 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match Pseudoknot geometry (10)	7	16
8	HL_69353.3 View exemplar Basepair signature: cWW History status: Exact match Mini UNCG (13)	3	15
9	HL_02361.2 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match GNRA (12) GNRA variation (2)	6	14
10	HL_08002.4 View exemplar Basepair signature: cWW-R-R-tWH History status: Exact match T-loop with unstacked turn (14)	6	14
11	HL_26055.3 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	14
12	HL_86880.3 View exemplar Basepair signature: cWW-R-R History status: Updated, 1 parent Pseudoknot geometry with 3' bulge (8)	5	13
13	HL_35978.4 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Updated, 2 parents U1 small nuclear ribonucleoprotein A binding hairpin (11)	11	13
14	HL_79272.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	11
15	HL_68493.3 View exemplar Basepair signature: cWW-tWH-R-R-R History status: Exact match T-loop with 2 stacked bulged bases (6) T-loop with 1 bulged base (3) Other HL (2)	7	11
16	HL_73266.2 View exemplar Basepair signature: cWW-R-cSW-R-cSH History status: Exact match	9	10
17	HL_36982.2 View exemplar Basepair signature: cWW History status: Exact match Mini UNCG (8)	3	9
18	HL_87219.3 View exemplar Basepair signature: cWW-R-tSH-R-R-R-R History status: Exact match	10	9
19	HL_01008.3 View exemplar Basepair signature: cWW-R History status: Exact match	4	9
20	HL_32617.1 View exemplar Basepair signature: cWW-cSH History status: Exact match tRNA D-loop (8) D-loop related (1)	5	9
21	HL_04171.2 View exemplar Basepair signature: cWW-cWW-R-cSS-cSS-R History status: Exact match	10	9
22	HL_61092.1 View exemplar Basepair signature: cWW-cWS-R-R-R History status: Exact match tRNA D-loop (2)	7	8
23	HL_54035.3 View exemplar Basepair signature: cWW-cWW-R-R-R History status: Exact match T-loop related (4)	8	8
24	HL_14612.3 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	8
25	HL_81508.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match GNRA related (3) GNRA wlth tandem sheared (1)	7	8
26	HL_98995.3 View exemplar Basepair signature: cWW-R-R-R History status: Exact match Ribsomal LSU H95 (4) Pseudoknot geometry (2)	6	8
27	HL_92681.3 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	7
28	HL_02733.3 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	7
29	HL_23481.3 View exemplar Basepair signature: cWW-tSH-R-R-R History status: Exact match GNRA (1)	7	7
30	HL_57052.2 View exemplar Basepair signature: cWW History status: Exact match Mini UNCG (5)	3	7
31	HL_67216.3 View exemplar Basepair signature: cWW-tSH-R-R-R History status: Exact match GNRA (1)	7	7
32	HL_67265.3 View exemplar Basepair signature: cWW-R-tHW-R-R-R-R-R History status: Exact match	10	7
33	HL_98557.3 View exemplar Basepair signature: cWW History status: Exact match	3	7
34	HL_35894.2 View exemplar Basepair signature: cWW-cSW-R-R History status: Exact match	6	7
35	HL_10751.2 View exemplar Basepair signature: cWW-cWS-R-R-R-R History status: Exact match tRNA D-loop (5)	8	7
36	HL_31286.2 View exemplar Basepair signature: cWW-tWH-R-R-R-R-R History status: Exact match Anticodon loop related (1)	9	6
37	HL_82678.2 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	5	6
38	HL_56677.3 View exemplar Basepair signature: cWW-tSH-cWH-tSH-tWH-tHW-tHW-tSW History status: Exact match	13	6
39	HL_19870.3 View exemplar Basepair signature: cWW-tSH-tHH-tWW-R-R-R History status: Exact match	11	6
40	HL_68304.4 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match GNRA (6)	6	6
41	HL_50622.4 View exemplar Basepair signature: cWW-R-tSH-R-R-R-R-R History status: Exact match	11	6
42	HL_20743.1 View exemplar Basepair signature: cWW-R-cSS-R-R History status: Exact match	8	6
43	HL_17926.3 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: Exact match Pseudoknot geometry (2)	9	6
44	HL_05018.3 View exemplar Basepair signature: cWW-cSW-R-R-R-R History status: Exact match	8	6
45	HL_36421.3 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R History status: Exact match	9	6
46	HL_78457.3 View exemplar Basepair signature: cWW-tWH-R-tSH-R History status: Exact match	8	6
47	HL_15942.3 View exemplar Basepair signature: cWW-R History status: Exact match Externally structured (1)	4	6
48	HL_72451.3 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	6
49	HL_92304.2 View exemplar Basepair signature: cWW-cSW-R-R-tSH-R-R History status: Exact match	10	5
50	HL_99402.2 View exemplar Basepair signature: cWW-R-R-cSH-cSH-R-R History status: Exact match Pseudoknot with intercalation (3)	10	5
51	HL_66171.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	5
52	HL_16839.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match tRNA D-loop (2)	7	5
53	HL_19337.2 View exemplar Basepair signature: cWW-R History status: Exact match	4	5
54	HL_19958.1 View exemplar Basepair signature: cWW-cWW-cWS-R-R History status: Exact match	8	5
55	HL_39334.3 View exemplar Basepair signature: cWW-tSW-R-R History status: Exact match	7	5
56	HL_90642.3 View exemplar Basepair signature: cWW-R-R-tWH-R History status: Exact match	7	5
57	HL_39778.2 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	5
58	HL_43613.3 View exemplar Basepair signature: cWW-tWH-tWH-R History status: Exact match	7	5
59	HL_63699.1 View exemplar Basepair signature: cWW-R-tSW-R History status: Exact match	6	5
60	HL_18368.4 View exemplar Basepair signature: cWW-R History status: Exact match	4	4
61	HL_41778.1 View exemplar Basepair signature: cWW-cWS-tSW History status: Exact match	6	4
62	HL_36559.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R History status: Exact match Anticodon loop related (2)	8	4
63	HL_42733.1 View exemplar Basepair signature: cWW-cWW-tSH-R-R History status: Exact match tRNA anticodon loop (1) GNRA with extra cWW (1) GNRA related (1)	8	4
64	HL_94651.1 View exemplar Basepair signature: cWW-tSS-R-R-R History status: Exact match	7	4
65	HL_89082.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R-R History status: Exact match	11	4
66	HL_69774.2 View exemplar Basepair signature: cWW-tSW-R History status: Exact match Fab BL3-6 binding hairpin with tSW (3) Other HL (1)	5	4
67	HL_94757.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	4
68	HL_29487.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match Mini UNCG (4)	6	4
69	HL_81439.4 View exemplar Basepair signature: cWW-tSH-R History status: Exact match GNRA related (2)	5	4
70	HL_48376.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R History status: Exact match	9	4
71	HL_62869.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	4
72	HL_54654.1 View exemplar Basepair signature: cWW-R History status: Exact match Mini UNCG (1)	4	4
73	HL_68529.1 View exemplar Basepair signature: cWW History status: Exact match Mini UNCG (3)	3	4
74	HL_86769.2 View exemplar Basepair signature: cWW-cSS-cSH History status: Exact match	7	4
75	HL_05123.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R History status: Exact match Pseudoknot geometry (2)	9	4
76	HL_49196.2 View exemplar Basepair signature: cWW-cWW-R History status: Exact match	6	4
77	HL_94352.2 View exemplar Basepair signature: cWW-R-R History status: Exact match	3	3
78	HL_31581.2 View exemplar Basepair signature: cWW-R-cSH-R-R-R-R-R-R History status: Updated, 2 parents U1 small nuclear ribonucleoprotein A binding hairpin (1)	12	3
79	HL_19162.2 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R-R-R-R History status: Exact match	12	3
80	HL_49873.1 View exemplar Basepair signature: cWW-tSH-cWS-cWS-R History status: Exact match tRNA D-loop (3)	8	3
81	HL_32458.1 View exemplar Basepair signature: cWW-R-tWH-R-R-R History status: Exact match	9	3
82	HL_80105.3 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	3
83	HL_23537.2 View exemplar Basepair signature: cWW-R-R-tWH-R-R-R-R History status: Exact match T-loop with unstacked turn (3)	10	3
84	HL_16845.4 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	3
85	HL_93212.3 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	3
86	HL_17086.2 View exemplar Basepair signature: cWW-cWW-R-tSH-R-tSH-R-R History status: Exact match	13	3
87	HL_75091.1 View exemplar Basepair signature: cWW-R-R-R-cSH-R History status: Exact match	9	3
88	HL_43355.1 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match	6	3
89	HL_53987.1 View exemplar Basepair signature: cWW-cWS History status: Exact match D-loop related (2)	4	3
90	HL_50537.2 View exemplar Basepair signature: cWW-bif-R-R-R-R History status: Exact match	8	3
91	HL_81327.1 View exemplar Basepair signature: cWW-R-R History status: Exact match tRNA D-loop (2)	5	3
92	HL_33483.1 View exemplar Basepair signature: cWW-cWS-R History status: Exact match tRNA D-loop (3)	5	3
93	HL_43610.1 View exemplar Basepair signature: cWW-cWW-R-R History status: Exact match	7	3
94	HL_86109.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F History status: Exact match	0	3
95	HL_01472.1 View exemplar Basepair signature: cWW-R-tSW-R History status: Exact match	6	3
96	HL_98885.3 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match Pseudoknot geometry (2)	10	3
97	HL_96776.2 View exemplar Basepair signature: cWW-R-cSW-R History status: Exact match	5	3
98	HL_18218.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	3
99	HL_91503.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: Exact match	9	3
100	HL_07432.1 View exemplar Basepair signature: cWW-R-R-cWS-cSH-R-R History status: Exact match	11	2
101	HL_64887.1 View exemplar Basepair signature: cWW-cWS-R History status: Exact match tRNA D-loop (2)	5	2
102	HL_05607.1 View exemplar Basepair signature: cWW-cWH-R History status: Exact match	5	2
103	HL_15968.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	2
104	HL_26772.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R-R-R History status: Exact match	11	2
105	HL_07579.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R-R History status: Exact match	14	2
106	HL_12571.1 View exemplar Basepair signature: cWW-tSH-cWS-tSW-R-R-R-R-R History status: Exact match tRNA D-loop (2)	13	2
107	HL_27335.1 View exemplar Basepair signature: cWW-cWW-R History status: Exact match	6	2
108	HL_97126.1 View exemplar Basepair signature: cWW-R History status: Exact match Mini UNCG related (1)	4	2
109	HL_67052.1 View exemplar Basepair signature: cWW-bif-R-R-R-R History status: Exact match tRNA anticodon loop (1)	8	2
110	HL_12703.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	2
111	HL_35442.1 View exemplar Basepair signature: cWW-tSW-R-R History status: Exact match UNCG (1)	5	2
112	HL_88982.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	2
113	HL_00186.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	2
114	HL_35491.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	2
115	HL_49992.1 View exemplar Basepair signature: cWW-cWW-tWH-tWH-R-R History status: Exact match	10	2
116	HL_60695.1 View exemplar Basepair signature: cWW-cWH-R History status: Exact match	5	2
117	HL_08510.1 View exemplar Basepair signature: cWW-F-F-cSH-F-F History status: Exact match	0	2
118	HL_80705.1 View exemplar Basepair signature: cWW-tWW-R-R-R History status: Exact match Pseudoknot (2)	7	2
119	HL_24323.1 View exemplar Basepair signature: cWW-tWW-R-R-R-R-R-R History status: Exact match Pseudoknot geometry (1)	10	2
120	HL_94657.1 View exemplar Basepair signature: cWW-tHH-R-R-R History status: Exact match	7	2
121	HL_06048.1 View exemplar Basepair signature: cWW-R-cSS-cSS-R History status: Exact match	9	2
122	HL_38646.2 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match T-loop related (2)	7	2
123	HL_50314.1 View exemplar Basepair signature: cWW History status: Exact match Mini UNCG (1)	3	2
124	HL_81205.1 View exemplar Basepair signature: cWW-cWW-R-R-tWH-R-tWH-R-R-R History status: Exact match	14	2
125	HL_24625.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	2
126	HL_69941.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	2
127	HL_84050.1 View exemplar Basepair signature: cWW-R-cSH History status: Exact match D-loop related (2)	6	2
128	HL_17217.1 View exemplar Basepair signature: cWW-R-tSW History status: Exact match	5	2
129	HL_61893.2 View exemplar Basepair signature: cWW-R-R-R History status: Exact match GNRA (1)	6	2
130	HL_01181.1 View exemplar Basepair signature: cWW-tWH-R-R-R History status: Exact match	7	2
131	HL_47809.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	2
132	HL_61984.1 View exemplar Basepair signature: cWW History status: Exact match Mini UNCG (1)	3	2
133	HL_76406.3 View exemplar Basepair signature: cWW-cWH-R-R-R-R History status: Exact match	9	2
134	HL_54357.1 View exemplar Basepair signature: cWW-cWW-R-cSH-R History status: Exact match	8	2
135	HL_93551.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match Mini UNCG with extended bulge (1)	8	2
136	HL_06483.1 View exemplar Basepair signature: cWW-tSH-cWS-cSH-R History status: Exact match	9	2
137	HL_40469.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	2
138	HL_78061.1 View exemplar Basepair signature: cWW-R-R-R-tWH-R-R-R History status: Exact match T-loop with 3 stacked bulged bases (2)	10	2
139	HL_91050.1 View exemplar Basepair signature: cWW-tSH-R-R-R History status: Exact match	7	2
140	HL_98870.1 View exemplar Basepair signature: cWW-tSH-tWW-F-F-F-F-F History status: Exact match	0	2
141	HL_20751.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	0	2
142	HL_33507.2 View exemplar Basepair signature: cWW-R History status: Exact match	4	2
143	HL_25762.1 View exemplar Basepair signature: cWW-bif-R-R History status: Exact match	6	2
144	HL_86378.1 View exemplar Basepair signature: cWW-cSH-R-R History status: Exact match	7	2
145	HL_30596.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	2
146	HL_10988.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	2
147	HL_93650.1 View exemplar Basepair signature: cWW-tWH-R-R-R-R-R-R-R-R-R-R History status: Exact match Pseudoknot geometry (1)	15	2
148	HL_02255.1 View exemplar Basepair signature: cWW-cWS-R History status: Exact match tRNA D-loop (2)	5	2
149	HL_11805.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match	11	2
150	HL_55200.2 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match	6	2
151	HL_82303.1 View exemplar Basepair signature: cWW-cWW-R-R History status: Exact match Other HL (1)	7	2
152	HL_86843.1 View exemplar Basepair signature: cWW-tSH-R-R-R History status: Exact match	7	2
153	HL_51284.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match	10	1
154	HL_12053.1 View exemplar Basepair signature: cWW-tSH-R History status: Exact match	5	1
155	HL_23090.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R History status: Exact match	8	1
156	HL_34516.1 View exemplar Basepair signature: cWW-R-cSH-R History status: Exact match	6	1
157	HL_44911.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
158	HL_56372.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match Pseudoknot geometry (1)	6	1
159	HL_68863.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match	11	1
160	HL_49213.1 View exemplar Basepair signature: cWW-tSH-tHW-R-R-R-R History status: Exact match	10	1
161	HL_59988.1 View exemplar Basepair signature: cWW-tSH-tSH-R-R History status: Exact match GNRA wlth tandem sheared (1)	8	1
162	HL_73051.1 View exemplar Basepair signature: cWW-cWW-cWH-cWH History status: Exact match G-quadruplex fragment (1)	8	1
163	HL_97049.1 View exemplar Basepair signature: cWW-cWS-cSH-R History status: Exact match	7	1
164	HL_18785.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
165	HL_42211.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R History status: Exact match	13	1
166	HL_52657.1 View exemplar Basepair signature: cWW-tSH-tSH-bif-R-R-R-R-R-R-R History status: Exact match	15	1
167	HL_92488.1 View exemplar Basepair signature: cWW-cWW-F-cSS-F-F-F-F-F-F History status: Exact match	0	1
168	HL_02483.1 View exemplar Basepair signature: cWW-tWH-F-cSH-F-F-F History status: Exact match	0	1
169	HL_23219.1 View exemplar Basepair signature: cWW-tSW-cWH-R-cSH History status: Exact match	6	1
170	HL_35010.1 View exemplar Basepair signature: cWW-tHH-cSH-R-R History status: Exact match	8	1
171	HL_45387.1 View exemplar Basepair signature: cWW-R-tSW History status: Exact match	5	1
172	HL_56500.1 View exemplar Basepair signature: cWW-cWW-F-cSH-F-F History status: Exact match	0	1
173	HL_82782.1 View exemplar Basepair signature: cWW-R-tSH-tHS-R-R-R-R-R-R-R-R-R-R History status: Exact match	18	1
174	HL_94363.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
175	HL_05667.1 View exemplar Basepair signature: cWW History status: Exact match	3	1
176	HL_16827.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
177	HL_49816.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
178	HL_60357.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
179	HL_73235.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	1
180	HL_32255.1 View exemplar Basepair signature: cWW-tWW-F-F-cWW-F-F History status: Exact match	0	1
181	HL_42671.1 View exemplar Basepair signature: cWW-R-R-tSS-R-R-R-R History status: Exact match	11	1
182	HL_53119.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	1
183	HL_79564.1 View exemplar Basepair signature: cWW-tSH-cWH-cHW-R-cHW-cWH-cHW-cWH-tSH-cHW-R-cWH-cWH-cHW-cWH-cWH-tSH-R-R History status: Exact match G-quadruplex (1)	22	1
184	HL_45493.1 View exemplar Basepair signature: cWW-tSW-R-R History status: Exact match UNCG variation (1)	6	1
185	HL_69459.1 View exemplar Basepair signature: cWW History status: Exact match	2	1
186	HL_82866.1 View exemplar Basepair signature: cWW-cWW-tWW-R-R-R-R-R-R-R-R-R-R-R History status: Exact match	17	1
187	HL_94607.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
188	HL_05692.1 View exemplar Basepair signature: cWW History status: Exact match	3	1
189	HL_27757.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
190	HL_37694.1 View exemplar Basepair signature: cWW-cWW-R-tSH-R-R History status: Exact match T-loop related (1)	9	1
191	HL_97733.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F History status: Exact match	0	1
192	HL_08291.1 View exemplar Basepair signature: cWW-R-tWH-R-R-R-R-R-R History status: Exact match	11	1
193	HL_53189.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	0	1
194	HL_67205.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
195	HL_93146.1 View exemplar Basepair signature: cWW History status: Exact match	3	1
196	HL_02811.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	0	1
197	HL_12710.1 View exemplar Basepair signature: cWW-cSH-cWW-R-R-tSH-R-R-R-R-R History status: Exact match	15	1
198	HL_45684.1 View exemplar Basepair signature: cWW-L-cWW-R-R-R-R-R History status: Exact match	11	1
199	HL_69677.1 View exemplar Basepair signature: cWW-R-R History status: New id, no parents	5	1
200	HL_83225.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
201	HL_05832.1 View exemplar Basepair signature: cWW-cWW-tSW-R History status: Exact match	7	1
202	HL_28843.1 View exemplar Basepair signature: cWW-tSH-tHW-cSH-R-R-R-R-R-R-R History status: Exact match Pseudoknot geometry with G-bulge (1)	14	1
203	HL_37846.1 View exemplar Basepair signature: cWW-tWW-R-R-R History status: Exact match Pseudoknot (1)	7	1
204	HL_74088.1 View exemplar Basepair signature: cWW-tSW-R-cWH-cHW-cHW-cWH-cHW-cWH-R-cWH-cWH-cWH-cWH-R History status: Exact match G-quadruplex (1)	18	1
205	HL_98248.1 View exemplar Basepair signature: cWW-cSH-tHW-R-R-R History status: Exact match	10	1
206	HL_00996.1 View exemplar Basepair signature: cWW-cWW History status: Exact match	5	1
207	HL_53849.1 View exemplar Basepair signature: cWW-cWW-R-cSW-R-cSH History status: Exact match	11	1
208	HL_02932.1 View exemplar Basepair signature: cWW-cSW-R-R-R-R-R-R-R History status: Exact match	11	1
209	HL_12773.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R History status: Exact match	13	1
210	HL_35550.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
211	HL_58200.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
212	HL_83704.1 View exemplar Basepair signature: cWW-R-R-cSS-R History status: Exact match	8	1
213	HL_29392.1 View exemplar Basepair signature: cWW-tWH-R-R-R-R History status: Exact match	8	1
214	HL_90197.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
215	HL_98252.1 View exemplar Basepair signature: cWW-tWW-F-F-F-F History status: Exact match	0	1
216	HL_08602.1 View exemplar Basepair signature: cWW-cSS-F-cSS-F-F-F-F-F History status: Exact match	0	1
217	HL_93221.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R History status: Exact match	13	1
218	HL_03427.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
219	HL_12870.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	0	1
220	HL_35888.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	0	1
221	HL_46463.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
222	HL_58446.1 View exemplar Basepair signature: cWW-R-R-R-R-R-tSW-R-R History status: Exact match	12	1
223	HL_06137.1 View exemplar Basepair signature: cWW-R-cWH-cHW-cHW-cWH-cHW-cWH-R-cWH-cWH-R-cWH-cWH History status: Exact match G-quadruplex (1)	16	1
224	HL_76360.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
225	HL_09712.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
226	HL_20714.1 View exemplar Basepair signature: cWW-cWW-tWH-R-R-R-R-R History status: Exact match	11	1
227	HL_43533.1 View exemplar Basepair signature: cWW-bif-tSH-R-R-R History status: Exact match Anticodon loop related (1)	9	1
228	HL_93229.1 View exemplar Basepair signature: cWW-cWW History status: Exact match	5	1
229	HL_03603.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R History status: Exact match Pseudoknot geometry (1)	15	1
230	HL_14286.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
231	HL_25183.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
232	HL_58539.1 View exemplar Basepair signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F History status: Exact match	0	1
233	HL_70505.1 View exemplar Basepair signature: cWW-cWW-tWW-R-R-R-R-R History status: Exact match	11	1
234	HL_85984.1 View exemplar Basepair signature: cWW-L-R-R-L-cWW-cWW-R-R-R History status: Exact match	14	1
235	HL_95237.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
236	HL_06228.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match Pseudoknot geometry (1)	7	1
237	HL_17899.1 View exemplar Basepair signature: cWW-R-tSW-R-R History status: Exact match	8	1
238	HL_30541.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
239	HL_90961.1 View exemplar Basepair signature: cWW-tSW History status: Exact match	4	1
240	HL_98841.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match U1 small nuclear ribonucleoprotein A binding hairpin (1)	11	1
241	HL_01187.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
242	HL_10536.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R History status: Exact match	10	1
243	HL_68478.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
244	HL_03847.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match	10	1
245	HL_25619.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match	11	1
246	HL_58733.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R History status: Exact match	12	1
247	HL_70845.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: New id, 1 parent	11	1
248	HL_96277.1 View exemplar Basepair signature: cWW-cWW-tWH-R-R-R History status: Exact match	9	1
249	HL_30585.1 View exemplar Basepair signature: cWW-R-R-R-cSS-R-cSW-R-R-R-R-R History status: Exact match	16	1
250	HL_50959.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
251	HL_93573.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
252	HL_14725.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R History status: Exact match	9	1
253	HL_36095.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: Exact match	9	1
254	HL_48962.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match	10	1
255	HL_59445.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
256	HL_72066.1 View exemplar Basepair signature: cWW-R-tWH-R-R-R History status: Exact match	8	1
257	HL_96487.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
258	HL_06645.1 View exemplar Basepair signature: cWW-cWW-R History status: Exact match	6	1
259	HL_17956.1 View exemplar Basepair signature: cWW-tSH-tHS-R-R History status: Exact match	8	1
260	HL_41017.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
261	HL_50967.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
262	HL_63693.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match Pseudoknot geometry (1)	8	1
263	HL_78351.1 View exemplar Basepair signature: cWW-R-cSH History status: Exact match	6	1
264	HL_91131.1 View exemplar Basepair signature: cWW-cWW-R-R History status: Exact match tRNA anticodon loop (1)	7	1
265	HL_01925.1 View exemplar Basepair signature: cWW-tSH-cWH-cHW-cHW-cWH-cHW-cWH-tSH-cHW-cWH-cWH-cHW-cWH-cWH-R-R History status: Exact match G-quadruplex (1)	19	1
266	HL_20891.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match	11	1
267	HL_33612.1 View exemplar Basepair signature: cWW-cWH-R-R History status: Exact match	6	1
268	HL_44221.1 View exemplar Basepair signature: cWW-cWW-R History status: Exact match	6	1
269	HL_55046.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
270	HL_81820.1 View exemplar Basepair signature: cWW-tSH-tHW-tHW-cSH-F History status: Exact match	11	1
271	HL_14859.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
272	HL_49194.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
273	HL_59564.1 View exemplar Basepair signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	0	1
274	HL_72419.1 View exemplar Basepair signature: cWW-tSH-tHH-R-R-R-R-R History status: Exact match	11	1
275	HL_07268.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match	11	1
276	HL_30819.1 View exemplar Basepair signature: cWW-cSH-tSS-R-R History status: Exact match Anticodon loop related (1)	8	1
277	HL_41285.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
278	HL_51090.1 View exemplar Basepair signature: cWW-cWS-R-R History status: Exact match tRNA D-loop (1)	6	1
279	HL_22443.1 View exemplar Basepair signature: cWW-R-tWH-R-tWH-R-R-R History status: Exact match	11	1
280	HL_34135.1 View exemplar Basepair signature: cWW-cWW-tSH-R History status: Exact match tRNA anticodon loop (1)	7	1
281	HL_44769.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match Pseudoknot geometry (1)	8	1
282	HL_68742.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	1
283	HL_94032.1 View exemplar Basepair signature: cWW-cSH-F-F-F-F-F-F History status: Exact match	0	1
284	HL_26501.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	1
285	HL_36552.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
286	HL_96854.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: Exact match	9	1