Motif HL_01472.1 Version HL_01472.1 of this group appears in releases 3.2 to 3.32
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4LFB_026 | 4LFB | 0.2975 | 1 | A | SSU rRNA | G | 1134 | U | 1135 | C | 1137 | G | 1138 | G | 1139 | C | 1140 | cWW | tSW |
| 2 | HL_5J7L_025 | 5J7L | 0.0000 | 1 | AA | SSU rRNA | G | 1134 | U | 1135 | C | 1137 | G | 1138 | G | 1139 | C | 1140 | ncWW | ntSW |
| 3 | HL_4V9F_005 | 4V9F | 0.4085 | 1 | 0 | LSU rRNA | C | 136 | U | 137 | C | 139 | G | 140 | C | 141 | G | 142 | cWW | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUCGGC | 1 |
| GUCCGGC | 1 |
| CUUCGCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCGG | 1 |
| UCCGG | 1 |
| UUCGC | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-R-tSW-R
- Heat map statistics
- Min 0.30 | Avg 0.25 | Max 0.43
Coloring options: