Motif HL_01475.1 Version HL_01475.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4QJD_004 | 4QJD | 0.4280 | 0 | T-loop with unstacked turn | D | Twister RNA sequence | G | 43 | U | 44 | C | 45 | C | 46 | C | 47 | A | 48 | A | 49 | G | 50 | C | 51 | C | 52 | cWW | ntWW |
| 2 | HL_4OJI_002 | 4OJI | 0.1617 | 0 | T-loop with unstacked turn | A | RNA (52-MER) | G | 23 | U | 24 | C | 25 | C | 26 | C | 27 | A | 28 | A | 29 | G | 30 | C | 31 | C | 32 | cWW | tWH |
| 3 | HL_4QJD_002 | 4QJD | 0.0000 | 0 | B | Twister RNA sequence | G | 43 | U | 44 | C | 45 | C | 46 | C | 47 | A | 48 | A | 49 | G | 50 | C | 51 | C | 52 | cWW | tWH | |
| 4 | HL_4QJH_004 | 4QJH | 0.2439 | 0 | D | Twister Ribozyme | G | 39 | U | 40 | U | 41 | A | 42 | C | 43 | A | 44 | A | 45 | G | 46 | C | 47 | C | 48 | cWW | ntWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCCCAAGCC | 3 |
| GUUACAAGCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCCCAAGC | 3 |
| UUACAAGC | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_01475.1 | Only in the parent motif |
|---|---|---|---|
| HL_94981.1 Compare | HL_4OJI_002 | HL_4QJD_002, HL_4QJH_004, HL_4QJD_004 |
Children motifs
This motif has no children motifs.- Annotations
-
- T-loop with unstacked turn (2)
- (2)
- Basepair signature
- cWW-R-R-tWH-R-R-R-R
- Heat map statistics
- Min 0.16 | Avg 0.25 | Max 0.47
Coloring options: