#SLoop idPDBDisc#Non-coreAnnotationChain(s) 1 2 3 4 5 6 7 8 9 101-102-7
1 HL_4QJD_0044QJD0.42800T-loop with unstacked turnDG43U44C45C46C47A48A49G50C51C52cWWntWW
2 HL_4OJI_0024OJI0.16170T-loop with unstacked turnAG23U24C25C26C27A28A29G30C31C32cWWtWH
3 HL_4QJD_0024QJD0.00000BG43U44C45C46C47A48A49G50C51C52cWWtWH
4 HL_4QJH_0044QJH0.24390DG39U40U41A42C43A44A45G46C47C48cWWntWH

3D structures

Complete motif including flanking bases
SequenceCounts
GUCCCAAGCC3
GUUACAAGCC1
Non-Watson-Crick part of the motif
SequenceCounts
UCCCAAGC3
UUACAAGC1

Release history

Release1.18
Date2014-10-09
StatusNew id, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in HL_01475.1Only in the parent motif
HL_94981.1
Compare
HL_4OJI_002HL_4QJD_002, HL_4QJH_004, HL_4QJD_004

Children motifs

This motif has no children motifs.
Annotations
  • T-loop with unstacked turn (2)
  • (2)
  • Basepair signature
    cWW-R-R-tWH-R-R-R-R
    Heat map statistics
    Min 0.16 | Avg 0.25 | Max 0.47
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