Motif HL_01788.3 Version HL_01788.3 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5H_070 | 3U5H | 0.3763 | 0 | 5 | C | 3240 | G | 3241 | G | 3242 | A | 3243 | A | 3244 | A | 3245 | G | 3246 | G | 3247 | cWW |
| 2 | HL_4CUV_070 | 4CUV | 0.0000 | 0 | 1 | C | 3240 | G | 3241 | G | 3242 | A | 3243 | A | 3244 | A | 3245 | G | 3246 | G | 3247 | cWW |
| 3 | HL_4W21_068 | 4W21 | 0.4300 | 0 | 5 | G | 4907 | G | 4908 | A | 4909 | G | 4910 | A | 4911 | G | 4912 | G | 4913 | C | 4914 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGAAAGG | 2 |
| GGAGAGGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAAAG | 2 |
| GAGAGG | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_01788.3 | Only in the parent motif |
|---|---|---|---|
| HL_01788.2 Compare | HL_4CUV_070, HL_3U5H_070 | HL_4W21_068 | HL_1VWW_068 |
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.38 | Avg 0.31 | Max 0.59
Coloring options: