Motif HL_01926.7 Version HL_01926.7 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VX6_050 | 1VX6 | 0.4771 | 1 | A | 28S ribosomal RNA | U | 2585 | C | 2586 | U | 2587 | A | 2588 | A | 2589 | U | 2590 | A | 2592 | G | 2593 | cWW | ncWW |
| 2 | HL_4A1B_049 | 4A1B | 0.3721 | 1 | 1 | 26S RRNA | U | 2287 | C | 2288 | U | 2289 | A | 2290 | A | 2291 | U | 2292 | A | 2294 | G | 2295 | cWW | ncWW |
| 3 | HL_3U5H_050 | 3U5H | 0.3810 | 1 | 5 | 25S rRNA | U | 2292 | C | 2293 | U | 2294 | A | 2295 | A | 2296 | U | 2297 | A | 2299 | G | 2300 | cWW | |
| 4 | HL_4CUV_050 | 4CUV | 0.3361 | 1 | 1 | 25S RRNA | U | 2292 | C | 2293 | U | 2294 | A | 2295 | A | 2296 | U | 2297 | A | 2299 | G | 2300 | cWW | |
| 5 | HL_1VW3_036 | 1VW3 | 0.2500 | 1 | A | 21S ribosomal RNA | U | 1849 | A | 1850 | U | 1851 | A | 1852 | A | 1853 | U | 1854 | G | 1856 | A | 1857 | cWW | |
| 6 | HL_4IOA_047 | 4IOA | 0.1163 | 1 | X | LSU rRNA | G | 1932 | G | 1933 | U | 1934 | A | 1935 | A | 1936 | G | 1937 | U | 1939 | C | 1940 | cWW | ncWB |
| 7 | HL_2QBG_051 | 2QBG | 0.1103 | 1 | B | 23S rRNA | G | 1949 | G | 1950 | U | 1951 | A | 1952 | A | 1953 | G | 1954 | U | 1956 | C | 1957 | cWW | ncWB |
| 8 | HL_4QCN_047 | 4QCN | 0.0000 | 1 | A | 23S Ribosomal RNA | G | 1971 | G | 1972 | U | 1973 | A | 1974 | A | 1975 | G | 1976 | U | 1978 | C | 1979 | cWW | |
| 9 | HL_1S72_051 | 1S72 | 0.2114 | 1 | 0 | LSU rRNA | C | 1990 | A | 1991 | U | 1992 | C | 1993 | A | 1994 | G | 1995 | A | 1997 | G | 1998 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUAAUUAG | 4 |
| GGUAAGUUC | 3 |
| UAUAAUUGA | 1 |
| CAUCAGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAAUUA | 4 |
| GUAAGUU | 3 |
| AUAAUUG | 1 |
| AUCAGUA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-06 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_01926.7 | Only in the parent motif |
|---|---|---|---|
| HL_01926.6 Compare | HL_2QBG_051, HL_4CUV_050, HL_4IOA_047, HL_1S72_051, HL_3U5H_050, HL_1VW3_036, HL_4A1B_049, HL_1VX6_050 | HL_4QCN_047 | HL_4NVV_047 |
Children motifs
| Child motif | Common motif instances | Only in HL_01926.7 | Only in the child motif |
|---|---|---|---|
| HL_01926.8 Compare | HL_2QBG_051, HL_4CUV_050, HL_4IOA_047, HL_1S72_051, HL_3U5H_050, HL_1VW3_036, HL_4QCN_047, HL_4A1B_049, HL_1VX6_050 | HL_4W21_025, HL_4W21_047 |
- Annotations
-
- (9)
- Basepair signature
- cWW-bif-R-tSH-R
- Heat map statistics
- Min 0.10 | Avg 0.29 | Max 0.54
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