#SLoop idPDBDisc#Non-coreChain(s)Standardized name for chain 1 2 3 4 5 6 7 81-82-7
1 HL_1S72_0511S720.211410 LSU rRNAC1990A1991U1992C1993A1994G1995A1997G1998cWW
2 HL_4QCN_0474QCN0.00001A LSU rRNAG1971G1972U1973A1974A1975G1976U1978C1979cWW
3 HL_2QBG_0512QBG0.11031B LSU rRNAG1949G1950U1951A1952A1953G1954U1956C1957cWWncWB
4 HL_4IOA_0474IOA0.11631X LSU rRNAG1932G1933U1934A1935A1936G1937U1939C1940cWWncWB
5 HL_1VW3_0361VW30.25001A LSU rRNAU1849A1850U1851A1852A1853U1854G1856A1857cWW
6 HL_4CUV_0504CUV0.336111 LSU rRNAU2292C2293U2294A2295A2296U2297A2299G2300cWW
7 HL_3U5H_0503U5H0.381015 LSU rRNAU2292C2293U2294A2295A2296U2297A2299G2300cWW
8 HL_4A1B_0494A1B0.372111 LSU rRNAU2287C2288U2289A2290A2291U2292A2294G2295cWWncWW
9 HL_1VX6_0501VX60.47711A LSU rRNAU2585C2586U2587A2588A2589U2590A2592G2593cWWncWW
10 HL_4W21_0254W210.816115 LSU rRNAU1863G1864G1865U1866A1867A1868C1870A1871cWWncWW
11 HL_4W21_0474W210.991715 LSU rRNAC3667C3668G3669C3670G3671G3672G3674G3675ncWW

3D structures

Complete motif including flanking bases
SequenceCounts
UCUAAUUAG4
GGUAAGUUC3
CAUCAGUAG1
UAUAAUUGA1
UGGUAAGCA1
CCGCGGCGG1
Non-Watson-Crick part of the motif
SequenceCounts
CUAAUUA4
GUAAGUU3
AUCAGUA1
AUAAUUG1
GGUAAGC1
CGCGGCG1

Release history

Release1.18
Date2014-10-09
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in HL_01926.8Only in the parent motif
HL_01926.7
Compare
HL_2QBG_051, HL_4CUV_050, HL_4IOA_047, HL_1S72_051, HL_3U5H_050, HL_1VW3_036, HL_4QCN_047, HL_4A1B_049, HL_1VX6_050HL_4W21_025, HL_4W21_047

Children motifs

This motif has no children motifs.
Annotations
  • (11)
  • Basepair signature
    cWW-bif-R-tSH-R
    Heat map statistics
    Min 0.10 | Avg 0.47 | Max 1.03
    Help

    Coloring options:

    HL_1S72_051:HL_1S72_051 = 0HL_1S72_051:HL_4QCN_047 = 0.2114HL_1S72_051:HL_2QBG_051 = 0.2451HL_1S72_051:HL_4IOA_047 = 0.2547HL_1S72_051:HL_1VW3_036 = 0.2891HL_1S72_051:HL_4CUV_050 = 0.4215HL_1S72_051:HL_3U5H_050 = 0.4571HL_1S72_051:HL_4A1B_049 = 0.4487HL_1S72_051:HL_1VX6_050 = 0.5369HL_1S72_051:HL_4W21_025 = 0.8077HL_1S72_051:HL_4W21_047 = 0.9353HL_4QCN_047:HL_1S72_051 = 0.2114HL_4QCN_047:HL_4QCN_047 = 0HL_4QCN_047:HL_2QBG_051 = 0.1103HL_4QCN_047:HL_4IOA_047 = 0.1163HL_4QCN_047:HL_1VW3_036 = 0.25HL_4QCN_047:HL_4CUV_050 = 0.3361HL_4QCN_047:HL_3U5H_050 = 0.381HL_4QCN_047:HL_4A1B_049 = 0.3721HL_4QCN_047:HL_1VX6_050 = 0.4771HL_4QCN_047:HL_4W21_025 = 0.8161HL_4QCN_047:HL_4W21_047 = 0.9917HL_2QBG_051:HL_1S72_051 = 0.2451HL_2QBG_051:HL_4QCN_047 = 0.1103HL_2QBG_051:HL_2QBG_051 = 0HL_2QBG_051:HL_4IOA_047 = 0.0987HL_2QBG_051:HL_1VW3_036 = 0.2624HL_2QBG_051:HL_4CUV_050 = 0.3697HL_2QBG_051:HL_3U5H_050 = 0.4132HL_2QBG_051:HL_4A1B_049 = 0.4014HL_2QBG_051:HL_1VX6_050 = 0.494HL_2QBG_051:HL_4W21_025 = 0.8676HL_2QBG_051:HL_4W21_047 = 1.0343HL_4IOA_047:HL_1S72_051 = 0.2547HL_4IOA_047:HL_4QCN_047 = 0.1163HL_4IOA_047:HL_2QBG_051 = 0.0987HL_4IOA_047:HL_4IOA_047 = 0HL_4IOA_047:HL_1VW3_036 = 0.257HL_4IOA_047:HL_4CUV_050 = 0.3772HL_4IOA_047:HL_3U5H_050 = 0.4098HL_4IOA_047:HL_4A1B_049 = 0.3957HL_4IOA_047:HL_1VX6_050 = 0.5061HL_4IOA_047:HL_4W21_025 = 0.8598HL_4IOA_047:HL_4W21_047 = 1.0209HL_1VW3_036:HL_1S72_051 = 0.2891HL_1VW3_036:HL_4QCN_047 = 0.25HL_1VW3_036:HL_2QBG_051 = 0.2624HL_1VW3_036:HL_4IOA_047 = 0.257HL_1VW3_036:HL_1VW3_036 = 0HL_1VW3_036:HL_4CUV_050 = 0.2787HL_1VW3_036:HL_3U5H_050 = 0.2865HL_1VW3_036:HL_4A1B_049 = 0.2762HL_1VW3_036:HL_1VX6_050 = 0.4448HL_1VW3_036:HL_4W21_025 = 0.8368HL_1VW3_036:HL_4W21_047 = 0.9644HL_4CUV_050:HL_1S72_051 = 0.4215HL_4CUV_050:HL_4QCN_047 = 0.3361HL_4CUV_050:HL_2QBG_051 = 0.3697HL_4CUV_050:HL_4IOA_047 = 0.3772HL_4CUV_050:HL_1VW3_036 = 0.2787HL_4CUV_050:HL_4CUV_050 = 0HL_4CUV_050:HL_3U5H_050 = 0.1092HL_4CUV_050:HL_4A1B_049 = 0.1484HL_4CUV_050:HL_1VX6_050 = 0.3918HL_4CUV_050:HL_4W21_025 = 0.7494HL_4CUV_050:HL_4W21_047 = 0.9355HL_3U5H_050:HL_1S72_051 = 0.4571HL_3U5H_050:HL_4QCN_047 = 0.381HL_3U5H_050:HL_2QBG_051 = 0.4132HL_3U5H_050:HL_4IOA_047 = 0.4098HL_3U5H_050:HL_1VW3_036 = 0.2865HL_3U5H_050:HL_4CUV_050 = 0.1092HL_3U5H_050:HL_3U5H_050 = 0HL_3U5H_050:HL_4A1B_049 = 0.0998HL_3U5H_050:HL_1VX6_050 = 0.3772HL_3U5H_050:HL_4W21_025 = 0.7683HL_3U5H_050:HL_4W21_047 = 0.9423HL_4A1B_049:HL_1S72_051 = 0.4487HL_4A1B_049:HL_4QCN_047 = 0.3721HL_4A1B_049:HL_2QBG_051 = 0.4014HL_4A1B_049:HL_4IOA_047 = 0.3957HL_4A1B_049:HL_1VW3_036 = 0.2762HL_4A1B_049:HL_4CUV_050 = 0.1484HL_4A1B_049:HL_3U5H_050 = 0.0998HL_4A1B_049:HL_4A1B_049 = 0HL_4A1B_049:HL_1VX6_050 = 0.396HL_4A1B_049:HL_4W21_025 = 0.7712HL_4A1B_049:HL_4W21_047 = 0.9466HL_1VX6_050:HL_1S72_051 = 0.5369HL_1VX6_050:HL_4QCN_047 = 0.4771HL_1VX6_050:HL_2QBG_051 = 0.494HL_1VX6_050:HL_4IOA_047 = 0.5061HL_1VX6_050:HL_1VW3_036 = 0.4448HL_1VX6_050:HL_4CUV_050 = 0.3918HL_1VX6_050:HL_3U5H_050 = 0.3772HL_1VX6_050:HL_4A1B_049 = 0.396HL_1VX6_050:HL_1VX6_050 = 0HL_1VX6_050:HL_4W21_025 = 0.8256HL_1VX6_050:HL_4W21_047 = 0.9947HL_4W21_025:HL_1S72_051 = 0.8077HL_4W21_025:HL_4QCN_047 = 0.8161HL_4W21_025:HL_2QBG_051 = 0.8676HL_4W21_025:HL_4IOA_047 = 0.8598HL_4W21_025:HL_1VW3_036 = 0.8368HL_4W21_025:HL_4CUV_050 = 0.7494HL_4W21_025:HL_3U5H_050 = 0.7683HL_4W21_025:HL_4A1B_049 = 0.7712HL_4W21_025:HL_1VX6_050 = 0.8256HL_4W21_025:HL_4W21_025 = 0HL_4W21_025:HL_4W21_047 = 0.4874HL_4W21_047:HL_1S72_051 = 0.9353HL_4W21_047:HL_4QCN_047 = 0.9917HL_4W21_047:HL_2QBG_051 = 1.0343HL_4W21_047:HL_4IOA_047 = 1.0209HL_4W21_047:HL_1VW3_036 = 0.9644HL_4W21_047:HL_4CUV_050 = 0.9355HL_4W21_047:HL_3U5H_050 = 0.9423HL_4W21_047:HL_4A1B_049 = 0.9466HL_4W21_047:HL_1VX6_050 = 0.9947HL_4W21_047:HL_4W21_025 = 0.4874HL_4W21_047:HL_4W21_047 = 0HL_1S72_051HL_4QCN_047HL_2QBG_051HL_4IOA_047HL_1VW3_036HL_4CUV_050HL_3U5H_050HL_4A1B_049HL_1VX6_050HL_4W21_025HL_4W21_047Discrepancy0.000.200.400.600.801.00
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