#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 31-3
1 HL_4R4V_0024R4V0.23424AVS ribozyme RNAG670A673C676cWW
2 HL_8C3A_0778C3A0.086534 5.8S rRNAG124A126C129cWW
3 HL_5TBW_0765TBW0.000034 5.8S rRNAG124A126C129cWW
4 HL_8VTW_0518VTW0.520931A LSU rRNAC2205A2208G2219cWW
5 HL_6LT7_0016LT70.94501C50-mer RNAC42U45G46cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUAUUC2
GAAACAC1
CGGAUG1
CUUG1
Non-Watson-Crick part of the motif
SequenceCounts
UAUU2
AAACA1
GGAU1
UU1

Release history

Release3.87
Date2024-08-14
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (5)
  • Basepair signature
    cWW-F
    Heat map statistics
    Min 0.09 | Avg 0.39 | Max 0.95
    Help

    Coloring options:

    HL_4R4V_002:HL_4R4V_002 = 0HL_4R4V_002:HL_8C3A_077 = 0.2187HL_4R4V_002:HL_5TBW_076 = 0.2342HL_4R4V_002:HL_8VTW_051 = 0.5274HL_4R4V_002:HL_6LT7_001 = 0.6634HL_8C3A_077:HL_4R4V_002 = 0.2187HL_8C3A_077:HL_8C3A_077 = 0HL_8C3A_077:HL_5TBW_076 = 0.0865HL_8C3A_077:HL_8VTW_051 = 0.5651HL_8C3A_077:HL_6LT7_001 = 0.9084HL_5TBW_076:HL_4R4V_002 = 0.2342HL_5TBW_076:HL_8C3A_077 = 0.0865HL_5TBW_076:HL_5TBW_076 = 0HL_5TBW_076:HL_8VTW_051 = 0.5209HL_5TBW_076:HL_6LT7_001 = 0.945HL_8VTW_051:HL_4R4V_002 = 0.5274HL_8VTW_051:HL_8C3A_077 = 0.5651HL_8VTW_051:HL_5TBW_076 = 0.5209HL_8VTW_051:HL_8VTW_051 = 0HL_8VTW_051:HL_6LT7_001 = 0.2609HL_6LT7_001:HL_4R4V_002 = 0.6634HL_6LT7_001:HL_8C3A_077 = 0.9084HL_6LT7_001:HL_5TBW_076 = 0.945HL_6LT7_001:HL_8VTW_051 = 0.2609HL_6LT7_001:HL_6LT7_001 = 0HL_4R4V_002HL_8C3A_077HL_5TBW_076HL_8VTW_051HL_6LT7_001Discrepancy0.000.200.400.600.80
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