Motif HL_02862.1 Version HL_02862.1 of this group appears in releases 3.77 to 3.79

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5	1-5	2-4
1	HL_4UYK_003	4UYK	0.3240	1	R	SRP RNA	U	98	G	99	U	100	A	101	G	103	cWW	ntSW
2	HL_7RQB_007	7RQB	0.0000	1	1A	LSU rRNA	A	225	G	226	A	227	A	228	U	230	cWW
3	HL_7A0S_007	7A0S	0.3122	1	X	LSU rRNA	A	202	G	203	A	204	A	205	U	207	cWW	cSW
4	HL_4WF9_007	4WF9	0.3818	1	X	LSU rRNA	A	228	A	229	A	230	A	231	U	233	cWW	cSW
5	HL_5TBW_002	5TBW	0.3355	1	1	LSU rRNA	C	69	A	70	A	71	C	72	G	74	cWW	cSW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGUAAG	1
AGAAAU	1
AGAAUU	1
AAAAUU	1
CAACCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUAA	1
GAAA	1
GAAU	1
AAAU	1
AACC	1

Release history

Release	3.77	3.78	3.79
Date	2023-12-06	2024-01-03	2024-01-03
Status	New id, > 2 parents	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-F-F-F
Heat map statistics: Min 0.23 | Avg 0.28 | Max 0.46

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