Motif HL_02862.1 Version HL_02862.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4UYK_003 | 4UYK | 0.3240 | 1 | R | U | 98 | G | 99 | U | 100 | A | 101 | G | 103 | cWW | ntSW |
| 2 | HL_7RQB_007 | 7RQB | 0.0000 | 1 | 1A | A | 225 | G | 226 | A | 227 | A | 228 | U | 230 | cWW | |
| 3 | HL_7A0S_007 | 7A0S | 0.3122 | 1 | X | A | 202 | G | 203 | A | 204 | A | 205 | U | 207 | cWW | cSW |
| 4 | HL_4WF9_007 | 4WF9 | 0.3818 | 1 | X | A | 228 | A | 229 | A | 230 | A | 231 | U | 233 | cWW | cSW |
| 5 | HL_5TBW_002 | 5TBW | 0.3355 | 1 | 1 | C | 69 | A | 70 | A | 71 | C | 72 | G | 74 | cWW | cSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUAAG | 1 |
| AGAAAU | 1 |
| AGAAUU | 1 |
| AAAAUU | 1 |
| CAACCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAA | 1 |
| GAAA | 1 |
| GAAU | 1 |
| AAAU | 1 |
| AACC | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.23 | Avg 0.28 | Max 0.46
Coloring options: