Hairpin Loop Motif Atlas Release 3.78

#	Motif	Num Nts	Instances
1	HL_79546.1 View exemplar Basepair signature: cWW-tSH-F-F History status: Exact match GNRA (185) Other HL (10) GNRA with one bulged base (10) GNRA with GA tSW pair (4)	6	269
2	HL_22280.1 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Exact match T-loop with 2 stacked bulged bases (48) Other HL (2)	7	61
3	HL_03562.1 View exemplar Basepair signature: cWW-tSW-F History status: Exact match UNCG (28) Other HL (2)	5	53
4	HL_87030.1 View exemplar Basepair signature: cWW-F-F History status: Exact match Other HL (19) GNRA (1)	4	35
5	HL_89380.1 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Exact match T-loop with 2 stacked bulged bases (11) T-loop with 2 bulged bases not stacked (8) T-loop with 1 bulged base (6)	7	34
6	HL_53597.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match tRNA anticodon loop (19) Varkud satellite (VS) ribozyme helix 1 (1) Guanidine riboswitch aptamer P2 hairpin (1)	8	29
7	HL_53640.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match Ribsomal LSU H95 (5)	6	28
8	HL_98984.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	28
9	HL_38927.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	27
10	HL_71309.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F History status: Exact match T-loop with 2 stacked bulged bases (21)	9	25
11	HL_12078.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	24
12	HL_25462.1 View exemplar Basepair signature: cWW-cWS History status: Exact match	4	20
13	HL_84085.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F History status: Exact match	8	19
14	HL_53171.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	17
15	HL_08002.7 View exemplar Basepair signature: cWW-tWH-F-F History status: Exact match	6	17
16	HL_76539.1 View exemplar Basepair signature: cWW-F History status: Exact match Other HL (4)	3	17
17	HL_89098.1 View exemplar Basepair signature: cWW-F History status: Exact match	0	15
18	HL_82739.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	15
19	HL_73067.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	14
20	HL_69023.1 View exemplar Basepair signature: cWW-tWH-tSH-F-F History status: Exact match	8	13
21	HL_86152.1 View exemplar Basepair signature: cWW-cSW-F History status: Exact match T-loop with 1 bulged base (1) Other HL (1)	5	13
22	HL_79921.1 View exemplar Basepair signature: cWW-tSW-F History status: Exact match	5	13
23	HL_30784.1 View exemplar Basepair signature: cWW-tSH-F History status: Exact match Other HL (1)	5	12
24	HL_97041.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	12
25	HL_06192.1 View exemplar Basepair signature: cWW-tSH-F-F History status: Exact match	6	12
26	HL_73266.5 View exemplar Basepair signature: cWW-R-cSW-R-cSH History status: Exact match	9	11
27	HL_91948.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	11
28	HL_64430.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	11
29	HL_14843.1 View exemplar Basepair signature: cWW-cWS History status: Exact match tRNA Met D-loop (1)	0	11
30	HL_20698.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	11
31	HL_64970.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	10
32	HL_80489.1 View exemplar Basepair signature: cWW-tSH History status: Exact match GNRA (2) Other HL (2)	4	9
33	HL_88526.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match tRNA anticodon loop (1)	7	9
34	HL_82201.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	9
35	HL_71554.1 View exemplar Basepair signature: cWW-cWW-F-F-F History status: Exact match	7	9
36	HL_97896.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	9
37	HL_65572.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	9
38	HL_49288.1 View exemplar Basepair signature: cWW-cWW-F-F-F History status: Exact match	7	9
39	HL_34168.1 View exemplar Basepair signature: cWW-cWW-F History status: Exact match Other HL (1)	5	9
40	HL_08678.1 View exemplar Basepair signature: cWW-cSW-F-F-F-F History status: Exact match	8	9
41	HL_26881.1 View exemplar Basepair signature: cWW-tWH-F-F History status: Exact match	6	9
42	HL_66853.1 View exemplar Basepair signature: cWW-cWS-F-cSH History status: Exact match	7	8
43	HL_84503.1 View exemplar Basepair signature: cWW-cWS-F-F History status: Exact match	6	7
44	HL_10895.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	7
45	HL_04171.5 View exemplar Basepair signature: cWW-cWW-F-F-cSS-F-F History status: Exact match	0	7
46	HL_32617.4 View exemplar Basepair signature: cWW-F-cSH History status: Exact match tRNA Sec D-loop (4) CRISPR-Cas9 crRNA hairpin 4 (1)	5	7
47	HL_56677.6 View exemplar Basepair signature: cWW-tWH-tSH-tSH-tHW-tHW-F-F-cWH History status: Exact match	13	7
48	HL_93374.1 View exemplar Basepair signature: cWW-cWH History status: Exact match	4	7
49	HL_56691.1 View exemplar Basepair signature: cWW-F History status: Exact match Other HL (1)	3	7
50	HL_05241.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	7
51	HL_67216.6 View exemplar Basepair signature: cWW-tSH-F-F History status: Exact match	6	7
52	HL_02733.5 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	7
53	HL_36684.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	0	7
54	HL_43656.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	7
55	HL_20743.3 View exemplar Basepair signature: cWW-F-F-cSS-F History status: Exact match	7	6
56	HL_84193.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	6
57	HL_32369.1 View exemplar Basepair signature: cWW-tSW-F History status: Exact match UNCG (1)	5	6
58	HL_19870.5 View exemplar Basepair signature: cWW-tSH-tHH-tWW-R-R-R History status: Exact match	11	6
59	HL_52841.1 View exemplar Basepair signature: cWW-F History status: Exact match	0	6
60	HL_86769.3 View exemplar Basepair signature: cWW-F-cSS-cSH History status: Exact match	0	6
61	HL_06285.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F History status: Exact match	13	5
62	HL_02862.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	5
63	HL_04221.1 View exemplar Basepair signature: cWW-cWS-tSH-cWS-F History status: Exact match tRNA Leu D-loop (5)	8	5
64	HL_39334.5 View exemplar Basepair signature: cWW-tSW-R-R History status: Exact match	7	5
65	HL_76501.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	0	5
66	HL_82231.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: Exact match	0	5
67	HL_85680.1 View exemplar Basepair signature: cWW-tSH-F History status: Exact match	0	5
68	HL_24068.1 View exemplar Basepair signature: cWW-cWW-F-F-F History status: Exact match	7	5
69	HL_01057.1 View exemplar Basepair signature: cWW History status: Exact match	0	5
70	HL_35015.1 View exemplar Basepair signature: cWW-cWW-F-F History status: Exact match	6	5
71	HL_78614.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	5
72	HL_82832.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	5
73	HL_99167.1 View exemplar Basepair signature: cWW-F-F-F-F-F-cSH-cSH History status: Exact match	10	5
74	HL_90617.1 View exemplar Basepair signature: cWW-tSH History status: Exact match	4	5
75	HL_43613.4 View exemplar Basepair signature: cWW-tWH-tWH-R History status: Exact match	7	5
76	HL_94651.2 View exemplar Basepair signature: cWW-tSS History status: Exact match	4	5
77	HL_90642.5 View exemplar Basepair signature: cWW-R-R-tWH-R History status: Exact match	7	5
78	HL_43667.1 View exemplar Basepair signature: cWW-cWW-F-F History status: Exact match	6	4
79	HL_91503.4 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	4
80	HL_11410.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	4
81	HL_74322.1 View exemplar Basepair signature: cWW-tSW-F History status: Exact match	5	4
82	HL_89881.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F History status: Exact match	10	4
83	HL_50142.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match Other HL (1)	6	4
84	HL_14449.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	4
85	HL_83808.1 View exemplar Basepair signature: cWW-tWW-F-F-F History status: Exact match	0	4
86	HL_67667.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	0	4
87	HL_37658.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match Turnip yellow mosaic virus TLS RNA anticodon loop (1)	0	4
88	HL_96366.1 View exemplar Basepair signature: cWW-cWW-tWW-F-F-F-F History status: Exact match	10	3
89	HL_16845.6 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	3
90	HL_31581.5 View exemplar Basepair signature: cWW-F-F-F-cSH-F-F-F-F History status: Exact match	0	3
91	HL_73530.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	3
92	HL_81205.2 View exemplar Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F History status: Exact match	14	3
93	HL_92229.1 View exemplar Basepair signature: cWW-cWW-F-F-F History status: Exact match	7	3
94	HL_07579.2 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F-F History status: Exact match	14	3
95	HL_11805.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	3
96	HL_19162.3 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F-F History status: Exact match	11	3
97	HL_22629.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	3
98	HL_85445.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: Exact match	0	3
99	HL_92747.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	3
100	HL_23083.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	3
101	HL_71924.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: Exact match	10	3
102	HL_86109.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F History status: Exact match	0	3
103	HL_40407.1 View exemplar Basepair signature: cWW History status: Exact match	2	3
104	HL_14201.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	3
105	HL_94352.5 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	3
106	HL_50537.4 View exemplar Basepair signature: cWW-cWW-F-F History status: Exact match	6	3
107	HL_86332.1 View exemplar Basepair signature: cWW-tSH-cWS-F-F-F History status: Exact match	0	3
108	HL_06048.2 View exemplar Basepair signature: cWW-F-F-cSS-cSS-F History status: Exact match	0	3
109	HL_20482.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	3
110	HL_29732.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	0	3
111	HL_73247.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F-F-F-F History status: Exact match	0	3
112	HL_95902.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	3
113	HL_68830.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	2
114	HL_10775.1 View exemplar Basepair signature: cWW-cSH-F-F History status: Exact match	5	2
115	HL_38243.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	2
116	HL_60293.1 View exemplar Basepair signature: cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F History status: Exact match	0	2
117	HL_07518.1 View exemplar Basepair signature: cWW-tSH-F History status: Exact match Other HL (1)	0	2
118	HL_20751.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	0	2
119	HL_96851.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	2
120	HL_07551.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	2
121	HL_45785.1 View exemplar Basepair signature: cWW-F-F-F-F-cSH-F-F History status: Exact match	0	2
122	HL_88982.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	2
123	HL_39267.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match tRNA anticodon loop (1)	8	2
124	HL_64163.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F History status: Exact match	0	2
125	HL_46465.1 View exemplar Basepair signature: cWW-tSW-cSH-tHH-tWW-cHW-cWH-cHW-cWH-tWW-cWH-cWH-R-cWH-cWH-R History status: Exact match	21	2
126	HL_76406.3 View exemplar Basepair signature: cWW-cWH-R-R-R-R History status: Exact match	9	2
127	HL_46766.1 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Exact match	8	2
128	HL_08127.1 View exemplar Basepair signature: cWW History status: Exact match	0	2
129	HL_12758.1 View exemplar Basepair signature: cWW-tSH-F-F-F-cWH-cHW-cWH-cHW-cHW-cWH-F-cWH-F-cWH-cHW-tSH-cWH-cWH-cHW History status: Exact match	22	2
130	HL_04775.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	0	2
131	HL_40310.1 View exemplar Basepair signature: cWW-tSH-F-F-F History status: Exact match	0	2
132	HL_08510.1 View exemplar Basepair signature: cWW-F-F-cSH-F-F History status: Exact match	0	2
133	HL_72714.3 View exemplar Basepair signature: cWW-cWW-cWH-F-F-F-F-F History status: Exact match	0	2
134	HL_98870.1 View exemplar Basepair signature: cWW-tSH-tWW-F-F-F-F-F History status: Exact match	0	2
135	HL_77805.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	2
136	HL_89914.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F History status: Exact match	8	2
137	HL_90574.1 View exemplar Basepair signature: cWW-F History status: Exact match	0	2
138	HL_05727.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	0	2
139	HL_20146.1 View exemplar Basepair signature: cWW-tSH-F-F History status: Exact match	0	2
140	HL_73183.1 View exemplar Basepair signature: cWW-tSH-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	15	2
141	HL_79531.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	2
142	HL_09785.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Exact match	10	2
143	HL_86373.1 View exemplar Basepair signature: cWW-cWW History status: Exact match	4	2
144	HL_90620.1 View exemplar Basepair signature: cWW-F-F-F-F-cSW-cSH-F History status: Exact match	0	2
145	HL_09829.1 View exemplar Basepair signature: cWW-F History status: Exact match	0	2
146	HL_30239.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	0	2
147	HL_73255.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	0	2
148	HL_15708.1 View exemplar Basepair signature: cWW-F-F-cSH History status: Exact match	6	2
149	HL_44294.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	0	1
150	HL_53189.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	0	1
151	HL_16991.1 View exemplar Basepair signature: cWW-cWH-cWH-F-cWH-F History status: Exact match	0	1
152	HL_60914.1 View exemplar Basepair signature: cWW-F History status: Exact match	0	1
153	HL_70682.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Exact match	0	1
154	HL_84847.1 View exemplar Basepair signature: cWW-F-F-F-F-tWW-F-F-F-F-F-F History status: Exact match	0	1
155	HL_32255.1 View exemplar Basepair signature: cWW-tWW-F-F-cWW-F-F History status: Exact match	0	1
156	HL_18495.1 View exemplar Basepair signature: cWW-cWW-cSH-F-F History status: Exact match	8	1
157	HL_81820.1 View exemplar Basepair signature: cWW-tSH-tHW-tHW-cSH-F History status: Exact match	11	1
158	HL_22443.1 View exemplar Basepair signature: cWW-R-tWH-R-tWH-R-R-R History status: Exact match	10	1
159	HL_84861.1 View exemplar Basepair signature: cWW-F-cSH-F-F History status: Exact match	0	1
160	HL_97733.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F History status: Exact match	0	1
161	HL_92488.1 View exemplar Basepair signature: cWW-cWW-F-cSS-F-F-F-F-F-F History status: Exact match	0	1
162	HL_32426.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	0	1
163	HL_56500.1 View exemplar Basepair signature: cWW-cWW-F-cSH-F-F History status: Exact match	0	1
164	HL_04641.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	0	1
165	HL_19239.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	0	1
166	HL_39425.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-cSH History status: Exact match	11	1
167	HL_46771.1 View exemplar Basepair signature: cWW-tSS-F-F-F History status: Exact match	0	1
168	HL_98252.1 View exemplar Basepair signature: cWW-tWW-F-F-F-F History status: Exact match	0	1
169	HL_19650.1 View exemplar Basepair signature: cWW-cWH-tWH-F-F-F History status: Exact match	9	1
170	HL_00317.1 View exemplar Basepair signature: cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	0	1
171	HL_12870.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	0	1
172	HL_82782.1 View exemplar Basepair signature: cWW-R-tSH-tHS-R-R-R-R-R-R-R-R-R-R History status: Exact match	18	1
173	HL_94032.1 View exemplar Basepair signature: cWW-cSH-F-F-F-F-F-F History status: Exact match	0	1
174	HL_08602.1 View exemplar Basepair signature: cWW-cSS-F-cSS-F-F-F-F-F History status: Exact match	0	1
175	HL_57204.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	0	1
176	HL_40442.1 View exemplar Basepair signature: cWW-tSW-cWW-cWS-cWW-F-F History status: Exact match	0	1
177	HL_66902.1 View exemplar Basepair signature: cWW-cWS-R-R-R-R-R History status: Exact match	8	1
178	HL_02483.1 View exemplar Basepair signature: cWW-tWH-F-cSH-F-F-F History status: Exact match	0	1
179	HL_35888.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	0	1
180	HL_58539.1 View exemplar Basepair signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F History status: Exact match	0	1
181	HL_52434.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	1
182	HL_59445.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
183	HL_02811.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	0	1
184	HL_59564.1 View exemplar Basepair signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	0	1

Coloring options:
Nucleotide numbers

Exact match 184;

Hairpin Loop Motif Atlas Release 3.78 Download Csv Json

Hairpin Loop Motif Atlas Release 3.78

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