Motif HL_04171.8 Version HL_04171.8 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-7 | 5-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7KVT_001 | 7KVT | 0.2211 | 1 | B | Squash RNA aptamer bound to DFHBI-1T with iridium (III) ions | A | 23 | U | 24 | A | 25 | A | 26 | U | 27 | A | 28 | G | 30 | G | 31 | U | 32 | U | 33 | cWW | cwW | ||
| 2 | HL_3IVN_001 | 3IVN | 0.1768 | 1 | A | Purine riboswitch | A | 21 | U | 22 | G | 23 | A | 24 | U | 25 | A | 26 | G | 28 | G | 29 | U | 30 | U | 31 | cWW | cwW | ncSs | |
| 3 | HL_5SWD_004 | 5SWD | 0.1016 | 1 | B | Purine riboswitch | A | 30 | U | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | U | 39 | U | 40 | cWW | cwW | ncSs | |
| 4 | HL_8KEB_001 | 8KEB | 0.0000 | 1 | A | RNA (72-MER) | A | 18 | U | 19 | G | 20 | A | 21 | U | 22 | A | 23 | G | 25 | G | 26 | U | 27 | U | 28 | cWW | cwW | ncsS | |
| 5 | HL_4LX6_001 | 4LX6 | 0.0815 | 1 | A | Purine riboswitch | A | 30 | U | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | U | 39 | U | 40 | cWW | cwW | ncSs | |
| 6 | HL_4XNR_001 | 4XNR | 0.0924 | 1 | X | Purine riboswitch | A | 30 | U | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | U | 39 | U | 40 | cWW | cwW | ncSs |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUGAUAUGGUU | 5 |
| AUAAUAUGGUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAUAUGGU | 5 |
| UAAUAUGGU | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.06 | Avg 0.13 | Max 0.24
Coloring options: