Motif HL_04586.1 Version HL_04586.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9BZC_002 | 9BZC | 0.5327 | 0 | A | RNA (87-MER) | U | 54 | U | 55 | A | 56 | U | 57 | C | 58 | U | 59 | U | 60 | A | 61 | cWW | |
| 2 | HL_6DB8_001 | 6DB8 | 0.0000 | 0 | R | RNA (60-MER) | G | 12 | A | 13 | A | 14 | A | 15 | A | 16 | G | 17 | C | 18 | C | 19 | cWW | |
| 3 | HL_5ZQ8_002 | 5ZQ8 | 0.8351 | 2 | D | RNA (12-mer) | C | 744 | G | 745 | U | 746 | A | 749 | A | 750 | A | 751 | A | 752 | G | 753 | cWW | tHH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAUCUUA | 1 |
| GAAAAGCC | 1 |
| CGUGAAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAUCUU | 1 |
| AAAAGC | 1 |
| GU(MUM)GAAAA | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.53 | Avg 0.52 | Max 0.97
Coloring options: