Motif HL_05241.1 Version HL_05241.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_037 | 4WF9 | 0.0000 | 1 | Mini UNCG | X | LSU rRNA | C | 1612 | A | 1614 | G | 1615 | cWW |
| 2 | HL_5TBW_071 | 5TBW | 0.3597 | 1 | Mini UNCG | 1 | LSU rRNA | C | 3350 | U | 3352 | G | 3353 | cWW |
| 3 | HL_5U30_001 | 5U30 | 0.3428 | 1 | Mini UNCG | B | sgRNA | U | 4 | G | 6 | A | 7 | cWW |
| 4 | HL_7A0S_017 | 7A0S | 0.4595 | 3 | Mini UNCG with extended bulge | X | LSU rRNA | C | 553 | U | 557 | G | 558 | cWW |
| 5 | HL_4V88_192 | 4V88 | 0.5169 | 1 | Mini UNCG | A6 | SSU rRNA | C | 276 | U | 278 | G | 279 | cWW |
| 6 | HL_4L8H_001 | 4L8H | 0.4861 | 2 | Mini UNCG | R | RNA operator hairpin | C | 9 | A | 11 | G | 13 | cWW |
| 7 | HL_5J7L_169 | 5J7L | 0.4433 | 6 | Mini UNCG with extended bulge | DA | LSU rRNA | C | 1451 | U | 1458 | G | 1459 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUG | 2 |
| CGAG | 1 |
| UAGA | 1 |
| CUUAUG | 1 |
| CUAAG | 1 |
| CGACGGUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU | 2 |
| GA | 1 |
| AG | 1 |
| UUAU | 1 |
| UAA | 1 |
| GACGGUU | 1 |
- Annotations
-
- Mini UNCG (5)
- Mini UNCG with extended bulge (2)
- Basepair signature
- cWW-F
- Heat map statistics
- Min 0.11 | Avg 0.21 | Max 0.52
Coloring options: