Motif HL_05901.1 Version HL_05901.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J9W_106 | 3J9W | 0.2762 | 1 | BB | 5S rRNA | C | 36 | A | 37 | U | 38 | C | 40 | C | 41 | G | 42 | cWW |
| 2 | HL_4WFA_067 | 4WFA | 0.2229 | 1 | Y | 5S rRNA | C | 36 | A | 37 | U | 38 | C | 40 | C | 41 | G | 42 | cWW |
| 3 | HL_4V8P_236 | 4V8P | 0.2036 | 0 | G3 | 5S rRNA | C | 36 | A | 37 | U | 38 | U | 39 | C | 40 | G | 41 | cWW |
| 4 | HL_1S72_071 | 1S72 | 0.1549 | 1 | 9 | 5S rRNA | C | 37 | A | 38 | U | 39 | C | 41 | C | 42 | G | 43 | cWW |
| 5 | HL_4V8C_072 | 4V8C | 0.1262 | 1 | AB | 5S rRNA | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW |
| 6 | HL_4U26_102 | 4U26 | 0.0000 | 1 | BB | 5S rRNA | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW |
| 7 | HL_1MJI_001 | 1MJI | 0.1217 | 1 | C | 5S rRNA fragment | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW |
| 8 | HL_5DM6_070 | 5DM6 | 0.1986 | 1 | Y | 5S rRNA | C | 40 | A | 41 | U | 42 | C | 44 | C | 45 | G | 46 | cWW |
| 9 | HL_4U4U_224 | 4U4U | 0.2717 | 0 | 7 | 5S rRNA | C | 36 | G | 37 | U | 38 | C | 39 | C | 40 | G | 41 | cWW |
| 10 | HL_3J92_076 | 3J92 | 0.1976 | 0 | 7 | 5S rRNA | C | 36 | G | 37 | U | 38 | C | 39 | U | 40 | G | 41 | cWW |
| 11 | HL_3J7Q_071 | 3J7Q | 0.3022 | 0 | 7 | 5S rRNA | C | 36 | G | 37 | U | 38 | C | 39 | U | 40 | G | 41 | cWW |
| 12 | HL_3ADD_003 | 3ADD | 0.9528 | 0 | C | Selenocysteine transfer RNA | C | 47|||D | G | 47|||E | A | 47|||F | G | 47|||G | U | 47|||H | G | 47|||I | cWW |
| 13 | HL_5A2Q_033 | 5A2Q | 0.9525 | 0 | 3 | IRES | G | 161 | A | 162 | G | 163 | U | 164 | A | 165 | C | 166 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUGCCG | 4 |
| CGUCUG | 2 |
| CAUACCG | 1 |
| CAUUCG | 1 |
| CAUCCCG | 1 |
| CAUUCCG | 1 |
| CGUCCG | 1 |
| CGAGUG | 1 |
| GAGUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGCC | 4 |
| GUCU | 2 |
| AUACC | 1 |
| AUUC | 1 |
| AUCCC | 1 |
| AUUCC | 1 |
| GUCC | 1 |
| GAGU | 1 |
| AGUA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (13)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.12 | Avg 0.42 | Max 1.00
Coloring options: