HL_4V8P_236

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05901.1

Basepair signature

cWW-R-R-R

Number of instances in this motif group

13

Unit IDs

4V8P|1|G3|C|36
4V8P|1|G3|A|37
4V8P|1|G3|U|38
4V8P|1|G3|U|39
4V8P|1|G3|C|40
4V8P|1|G3|G|41

Current chains

Chain G3

5S RRNA

Nearby chains

Chain GD

60S RIBOSOMAL PROTEIN L11

Chain GM

60S RIBOSOMAL PROTEIN L5

Chain H1

Large subunit ribosomal RNA; LSU rRNA