Motif HL_06122.2 Version HL_06122.2 of this group appears in releases 1.15 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4P5J_004 | 4P5J | 0.2314 | 1 | A | tRNA-like 3' UTR element | A | 69 | G | 70 | G | 71 | G | 72 | U | 73 | A | 75 | U | 76 | cWW | csS | cSH |
| 2 | HL_1ET4_001 | 1ET4 | 0.0000 | 1 | A | RNA APTAMER, 35-MER | C | 219 | A | 220 | C | 221 | C | 222 | U | 223 | A | 225 | G | 226 | cWW | ||
| 3 | HL_1ET4_002 | 1ET4 | 0.2864 | 1 | B | RNA APTAMER, 35-MER | C | 319 | A | 320 | C | 321 | C | 322 | U | 323 | A | 325 | G | 326 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACCUCAG | 2 |
| AGGGUCAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACCUCA | 2 |
| GGGUCA | 1 |
Release history
| Release | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|
| Date | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_06122.2 | Only in the parent motif |
|---|---|---|---|
| HL_06122.1 Compare | HL_1ET4_002, HL_1ET4_001 | HL_4P5J_004 |
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cSS-cSH
- Heat map statistics
- Min 0.23 | Avg 0.21 | Max 0.42
Coloring options: