Motif HL_06247.1 Version HL_06247.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3PYO_070 | 3PYO | 0.1668 | 1 | B | 5S ribosomal RNA | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW |
| 2 | HL_2QBG_001 | 2QBG | 0.1562 | 1 | A | 5S rRNA | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW |
| 3 | HL_1MJI_002 | 1MJI | 0.1476 | 1 | D | 5S rRNA fragment | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW |
| 4 | HL_1S72_071 | 1S72 | 0.0000 | 1 | 9 | 5S rRNA | C | 37 | A | 38 | U | 39 | C | 41 | C | 42 | G | 43 | cWW |
| 5 | HL_1MJI_001 | 1MJI | 0.2167 | 1 | C | 5S rRNA fragment | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUGCCG | 3 |
| CAUUCCG | 1 |
| CAUCCCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGCC | 3 |
| AUUCC | 1 |
| AUCCC | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_06247.1 | Only in the child motif |
|---|---|---|---|
| HL_34027.1 Compare | HL_1S72_071, HL_1MJI_001, HL_2QBG_001 | HL_3PYO_070, HL_1MJI_002 | HL_3V2F_068, HL_3U5H_073, HL_4A1C_005, HL_3ADD_003 |
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