Motif HL_06315.1 Version HL_06315.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3SUX_001 | 3SUX | 0.0000 | 1 | X | THF riboswitch | A | 38 | C | 39 | G | 41 | G | 42 | G | 43 | A | 44 | G | 45 | U | 46 | U | 47 | ncWW | ncWW | |
| 2 | HL_8GLP_065 | 8GLP | 0.7380 | 2 | Pseudoknot geometry (H) | L5 | LSU rRNA | U | 4352 | PSU | 4353 | G | 4356 | G | 4357 | U | 4358 | U | 4359 | U | 4360 | PSU | 4361 | A | 4362 | cWW | cwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACGGGGAGUU | 1 |
| UUGGGUUUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGGGGAGU | 1 |
| (PSU)UGGGUUU(PSU) | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Pseudoknot geometry (H) (1)
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Heat map statistics
- Min 0.74 | Avg 0.37 | Max 0.74
Coloring options: