Motif HL_06627.1 Version HL_06627.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4RDX_001 | 4RDX | 0.7399 | 4 | C | tRNA | C | 13 | A | 14 | G | 15 | G | 19 | U | 20 | A | 21 | G | 22 | cWW | |||
| 2 | HL_4RDX_004 | 4RDX | 0.7399 | 4 | C | tRNA | C | 13||||4_577 | A | 14||||4_577 | G | 15||||4_577 | G | 19||||4_577 | U | 20||||4_577 | A | 21||||4_577 | G | 22||||4_577 | cWW | |||
| 3 | HL_4MGN_002 | 4MGN | 0.4589 | 2 | B | tRNA-glycine | C | 13 | A | 14 | G | 15 | G | 18 | U | 19 | A | 20 | G | 21 | cWW | ncWS | cSH | |
| 4 | HL_5AXM_004 | 5AXM | 0.0000 | 3 | P | tRNA | C | 13||||2_555 | A | 14||||2_555 | G | 15||||2_555 | G | 19||||2_555 | G | 20||||2_555 | A | 21||||2_555 | G | 22||||2_555 | cWW | ncWS | ||
| 5 | HL_5AXM_001 | 5AXM | 0.0000 | 3 | tRNA D-loop | P | tRNA | C | 13 | A | 14 | G | 15 | G | 19 | G | 20 | A | 21 | G | 22 | cWW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCUGGUUAG | 2 |
| CAGUUGGGAG | 2 |
| CAGUGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCUGGUUA | 2 |
| AGUUGGGA | 2 |
| AGUGGUA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- tRNA D-loop (1)
- Basepair signature
- cWW-cWS-R-R-R
- Heat map statistics
- Min 0.46 | Avg 0.42 | Max 0.74
Coloring options: