Motif HL_06643.2 Version HL_06643.2 of this group appears in releases 1.0 to 1.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3ADC_001 | 3ADC | 0.0000 | 1 | tRNA D-loop (H) | C | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | cSH |
| 2 | HL_3ADD_001 | 3ADD | 0.0506 | 1 | tRNA D-loop | C | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | cSH |
| 3 | HL_3RG5_001 | 3RG5 | 0.2773 | 1 | tRNA D-loop (H) | A | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | cSH |
| 4 | HL_3AM1_001 | 3AM1 | 0.3341 | 1 | tRNA D-loop | B | ASL-truncated tRNA | U | 18 | U | 19 | G | 21 | U | 22 | A | 23 | cWW | cSH |
| 5 | HL_3W3S_001 | 3W3S | 0.4110 | 1 | tRNA D-loop | B | Selenocysteine transfer RNA | C | 15 | U | 16 | G | 19 | U | 20 | G | 20|||A | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGGUC | 3 |
| UUGGUA | 1 |
| CUGGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGU | 5 |
Release history
| Release | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_06643.2 | Only in the parent motif |
|---|---|---|---|
| HL_06643.1 Compare | HL_3RG5_001, HL_3ADD_001, HL_3AM1_001, HL_3ADC_001 | HL_3W3S_001 | HL_2QBG_002 |
Children motifs
| Child motif | Common motif instances | Only in HL_06643.2 | Only in the child motif |
|---|---|---|---|
| HL_06643.3 Compare | HL_3W3S_001, HL_3RG5_001, HL_3ADD_001, HL_3AM1_001, HL_3ADC_001 | HL_4OO8_004 |
- Annotations
-
- tRNA D-loop (3)
- tRNA D-loop (H) (2)
- Basepair signature
- cWW-cSH
- Heat map statistics
- Min 0.05 | Avg 0.23 | Max 0.43
Coloring options: