Motif HL_06643.3 Version HL_06643.3 of this group appears in releases 1.12 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4OO8_004 | 4OO8 | 0.5666 | 0 | B | tracrRNA | G | 87 | A | 88 | G | 89 | U | 90 | C | 91 | cWW | cSH | |
| 2 | HL_3ADC_001 | 3ADC | 0.2773 | 1 | tRNA D-loop (H) | C | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | cSH |
| 3 | HL_3ADD_001 | 3ADD | 0.2641 | 1 | tRNA D-loop | C | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | cSH |
| 4 | HL_3RG5_001 | 3RG5 | 0.0000 | 1 | tRNA D-loop (H) | A | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | cSH |
| 5 | HL_3AM1_001 | 3AM1 | 0.2768 | 1 | tRNA D-loop | B | ASL-truncated tRNA | U | 18 | U | 19 | G | 21 | U | 22 | A | 23 | cWW | cSH |
| 6 | HL_3W3S_001 | 3W3S | 0.3200 | 1 | tRNA D-loop | B | Selenocysteine transfer RNA | C | 15 | U | 16 | G | 19 | U | 20 | G | 20|||A | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGGUC | 3 |
| GAGUC | 1 |
| UUGGUA | 1 |
| CUGGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGU | 5 |
| AGU | 1 |
Release history
| Release | 1.12 | 1.13 | 1.14 | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|---|---|---|
| Date | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_06643.3 | Only in the parent motif |
|---|---|---|---|
| HL_06643.2 Compare | HL_3W3S_001, HL_3RG5_001, HL_3ADD_001, HL_3AM1_001, HL_3ADC_001 | HL_4OO8_004 |
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (3)
- tRNA D-loop (H) (2)
- (1)
- Basepair signature
- cWW-cSH
- Heat map statistics
- Min 0.05 | Avg 0.34 | Max 0.69
Coloring options: