Motif HL_06643.3 Version HL_06643.3 of this group appears in releases 1.12 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	1-5	3-4
1	HL_4OO8_004	4OO8	0.5666	0		B	tracrRNA	G	87	A	88	G	89	U	90	C	91	cWW	cSH
2	HL_3ADC_001	3ADC	0.2773	1	tRNA D-loop (H)	C	Selenocysteine transfer RNA	G	15	U	16	G	19	U	20	C	20\|\|\|A	cWW	cSH
3	HL_3ADD_001	3ADD	0.2641	1	tRNA D-loop	C	Selenocysteine transfer RNA	G	15	U	16	G	19	U	20	C	20\|\|\|A	cWW	cSH
4	HL_3RG5_001	3RG5	0.0000	1	tRNA D-loop (H)	A	Selenocysteine transfer RNA	G	15	U	16	G	19	U	20	C	20\|\|\|A	cWW	cSH
5	HL_3AM1_001	3AM1	0.2768	1	tRNA D-loop	B	ASL-truncated tRNA	U	18	U	19	G	21	U	22	A	23	cWW	cSH
6	HL_3W3S_001	3W3S	0.3200	1	tRNA D-loop	B	Selenocysteine transfer RNA	C	15	U	16	G	19	U	20	G	20\|\|\|A	cWW	cSH

3D structures

Complete motif including flanking bases

Sequence	Counts
GUGGUC	3
GAGUC	1
UUGGUA	1
CUGGUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGGU	5
AGU	1

Release history

Release	1.12	1.13	1.14	1.15	1.16	1.17	1.18
Date	2014-03-01	2014-03-29	2014-04-27	2014-06-15	2014-07-26	2014-09-06	2014-10-09
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in HL_06643.3	Only in the parent motif
HL_06643.2 Compare	HL_3W3S_001, HL_3RG5_001, HL_3ADD_001, HL_3AM1_001, HL_3ADC_001	HL_4OO8_004

Children motifs

This motif has no children motifs.

Annotations: tRNA D-loop (3)
tRNA D-loop (H) (2)
(1)
Basepair signature: cWW-cSH
Heat map statistics: Min 0.05 | Avg 0.34 | Max 0.69

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Coloring options: Nucleotide numbers

Motif HL_06643.3 Version HL_06643.3 of this group appears in releases 1.12 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_06643.3 Version HL_06643.3 of this group appears in releases 1.12 to 1.18

Download

Csv

Json