Motif HL_06997.1 Version HL_06997.1 of this group appears in releases 1.5 to 1.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 7-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4JRC_002 | 4JRC | 0.0000 | 1 | B | Distal Stem I region of the glyQS T box leader RNA | G | 51 | G | 52 | G | 53 | C | 54 | G | 55 | G | 56 | U | 57 | G | 58 | G | 59 | G | 60 | A | 61 | C | 63 | cWW | tWH |
| 2 | HL_4LCK_005 | 4LCK | 0.3468 | 1 | C | T-box leader | G | 52 | G | 53 | A | 54 | U | 55 | A | 56 | G | 57 | U | 58 | G | 59 | A | 60 | A | 61 | A | 62 | C | 64 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGCGGUGGGAGC | 1 |
| GGAUAGUGAAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGCGGUGGGAG | 1 |
| GAUAGUGAAAG | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_06997.1 | Only in the parent motif |
|---|---|---|---|
| HL_34375.1 Compare | HL_4JRC_002 | HL_4LCK_005 |
Children motifs
| Child motif | Common motif instances | Only in HL_06997.1 | Only in the child motif |
|---|---|---|---|
| HL_06997.2 Compare | HL_4JRC_002, HL_4LCK_005 | HL_4MGN_005 |
- Annotations
-
- (2)
- Basepair signature
- cWW-tWH-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.35 | Avg 0.17 | Max 0.35
Coloring options: